Bioconductor GmapGenome

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gmapgenome gmapr fastafile

updated 6.0 years ago by Michael Lawrence 11k • written 6.1 years ago by Kyle Johnsen ▴ 20

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gmapr gmapgenome

updated 7.4 years ago by Michael Lawrence 11k • written 7.4 years ago by sean.taylor • 0

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gmapr gmapgenome annotationhub fafile

updated 7.5 years ago by Michael Lawrence 11k • written 7.5 years ago by Johannes Rainer ★ 2.0k

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gmapR GmapGenome error create

8.0 years ago lelemraposo • 0

4 results • Page 1 of 1

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Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by Hervé Pagès 16k

Available since last Friday. See https://bioconductor.org/packages/3.17/DelayedArray

Comment: Diffbind "No genome detected" by James W. MacDonald 63k

The error you see comes from an internal function called `pv.genome` that inspects the header of your BAM file and tries to infer the genom…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi James, Thanks for your reply! For the blacklist, I just used the one provided by DiffBind, which is "DBA_BLACKLIST_MM10". For the grey…

Answer: DESeq2 on multilevel design variable by ATpoint ★ 2.9k

You can make your life simply and use a contrast for each, for example: ```r library(DESeq2) dds <- makeExampleDESeqDataSet() diagnosis <…

Answer: Diffbind "No genome detected" by James W. MacDonald 63k

You can specify the greylist in the same manner as the blacklist, which should fix your problem.

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Comment: Sudden error with KEGG analysis using gometh

Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i

Answer: Annotation with org.Hs.eg.db Genome Build 38

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat

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Teacher to James W. MacDonald 63k