Bioconductor Graphviz

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pathview bioconductor graphics graphviz Pathview

updated 7.0 years ago by dondelelcaro ▴ 10 • written 7.1 years ago by guillermo.marco ▴ 30

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pathview clusterProfiler KEGGpath visualization Graphviz

updated 7.9 years ago by Luo Weijun ★ 1.6k • written 7.9 years ago by svlachavas ▴ 810

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pathview r pdf kegg graphviz

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Graphviz Rgraphviz

21 months ago c.bell.lu • 0

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r rstudio rgraphviz graphviz .dot

7.3 years ago pleaseteachmehowtodoit • 0

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rgraphviz graphviz R

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Pathview rgraphviz graphviz KEGG

updated 7.1 years ago by Luo Weijun ★ 1.6k • written 7.1 years ago by guillermo.marco ▴ 30

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Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10

Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …

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Answer: How do I merge a list of GRanges?

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar

Comment: DiffBind: dba.plotProfile(profiles)

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

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