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Showing :
Gviz-package
•
reset
0
votes
0
replies
814
views
Combine UCSC mm9 conservation and hg19 SNP data
gviz-package
6.4 years ago • updated 2.3 years ago
underscore
• 0
4
votes
4
replies
2.2k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 2.3 years ago by
Pariksheet Nanda
▴ 120 • written 5.6 years ago by
wsciekly.maciek
▴ 10
2
votes
9
replies
1.8k
views
Gviz: decreasing tick resolution
gviz
gviz-package
updated 5.3 years ago by
Robert Ivanek
▴ 730 • written 5.3 years ago by
willbradshaw
• 0
1
vote
2
replies
2.1k
views
Gviz: Setting Up Colour / Fill for AnnotationTrack (strand-dependent colour)
Gviz
gviz-package
GFF
annotationtrack
strand-dependent
updated 5.3 years ago by
Robert Ivanek
▴ 730 • written 5.3 years ago by
JezDD
• 0
0
votes
0
replies
2.0k
views
Gviz: plotting multiple data tracks with the same y-axis limit using Gviz
Gviz
gviz-package
5.7 years ago • updated 5.6 years ago
Mthabisi Moyo
▴ 40
1
vote
1
reply
1.3k
views
How to plot circular genomes with gviz?
gviz
gviz-package
5.7 years ago
Christopher.Rands
▴ 10
2
votes
6
replies
3.6k
views
Gviz change color of groups
gviz-package
gviz
updated 5.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 5.8 years ago by
franceschini.gianmarco
• 0
0
votes
1
reply
891
views
Gviz: Histograms in layers instead of stacked ANSWERED!
R
Gviz
gviz-package
5.8 years ago
stephen.williams
▴ 10
0
votes
1
reply
870
views
Gviz: Multiple BiomartGeneRegionTrack one object for Composite plots
gviz
gviz-package
5.9 years ago
stephen.williams
▴ 10
1
vote
0
replies
869
views
Arrange Gviz plotTracks() figure and basic R plot on a canvas
gviz
gviz-package
5.9 years ago
izzy.yichao.cai
▴ 10
2
votes
3
replies
924
views
Gviz: Flip tracks so 5 prime end always on left hand side.
gviz
gviz-package
updated 5.9 years ago by
Robert Ivanek
▴ 730 • written 5.9 years ago by
stephen.williams
▴ 10
0
votes
1
reply
1.0k
views
Error GC content and conservation visualization with Gviz
gviz
gviz-package
updated 5.9 years ago by
Robert Ivanek
▴ 730 • written 6.0 years ago by
h
• 0
0
votes
2
replies
1.2k
views
Gviz: Draw horizontal line on DataTrack
gviz
gviz-package
datatrack
plottracks
6.1 years ago
stephen.williams
▴ 10
0
votes
2
replies
1.2k
views
GViz, different group colours
gviz
gviz-package
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
p1990
• 0
0
votes
4
replies
1.7k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz
gviz-package
rtracklayer
http
6.2 years ago
enricoferrero
▴ 660
3
votes
6
replies
1.8k
views
gviz ideogramTrack connection error
gviz-package
gviz
updated 6.2 years ago by
Robert Ivanek
▴ 730 • written 6.2 years ago by
alperyilmaz
▴ 20
2
votes
0
replies
1.9k
views
Gviz plot combined with multiple ggplot2 plots
gviz
gviz-package
ggplot2
6.7 years ago
christian.aichmueller
▴ 20
0
votes
0
replies
764
views
Gviz Custom ordering of features in Annotationtrack
gviz
gviz-package
6.8 years ago
mnaymik
• 0
1
vote
1
reply
1.4k
views
Selecting only one transcript in BiomartGeneRegionTrack
gviz
gviz-package
R
updated 6.9 years ago by
Jeremy Ng
▴ 180 • written 6.9 years ago by
klim314
• 0
3
votes
2
replies
1.7k
views
Gviz AnnotationTrack id above feature
gviz-package
gviz
annotation
updated 7.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.1 years ago by
bruce.moran
▴ 30
0
votes
0
replies
1.0k
views
Data grouping with DataTrack or AlignmentTrack classes
gviz
gviz-package
7.1 years ago
jma1991
▴ 70
0
votes
0
replies
1.3k
views
Gviz: control height of items within BiomartGeneRegionTrack (StackedTrack)
Gviz
gviz-package
7.1 years ago
Kort, Eric
▴ 220
2
votes
4
replies
2.7k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.1 years ago by
br
• 0
23 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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