Bioconductor Gviz

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183

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Gviz

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by ilaria.maurizio • 0

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1.3k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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329

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Gviz

5 months ago dbsgtk • 0

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419

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rtracklayer UCSC Gviz

5 months ago yujin ▴ 10

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579

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rtracklayer Gviz

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by yujin ▴ 10

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1.7k

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Gviz coMET

16 months ago • updated 6 months ago Daniel E. Weeks ▴ 30

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718

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 7 months ago by Robert Ivanek ▴ 730 • written 7 months ago by Michael • 0

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527

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Gviz

updated 11 months ago by Robert Ivanek ▴ 730 • written 11 months ago by xiaofeiwang18266 ▴ 50

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Comment: Estimating Cell Counts for EPIC V2 array data by normawiedman059 • 0

0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…

Comment: Finding DEGs by using edgeR by Gordon Smyth 50k

Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …

Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0

Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…

Comment: Finding DEGs by using edgeR by prity6459 • 0

Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …

Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k

It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…

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A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

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