Bioconductor Gviz

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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rtracklayer Gviz

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by yujin ▴ 10

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Gviz

updated 11 months ago by Robert Ivanek ▴ 730 • written 11 months ago by xiaofeiwang18266 ▴ 50

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Gviz coMET

16 months ago • updated 6 months ago Daniel E. Weeks ▴ 30

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Gviz

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by ilaria.maurizio • 0

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DMRcate Gviz

updated 12 hours ago by russ.bainer ▴ 10 • written 13 months ago by jose.ramirez1 ▴ 10

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 7 months ago by Robert Ivanek ▴ 730 • written 7 months ago by Michael • 0

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Gviz

5 months ago dbsgtk • 0

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rtracklayer UCSC Gviz

5 months ago yujin ▴ 10

9 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k