Bioconductor Gviz

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180

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Gviz

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by ilaria.maurizio • 0

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326

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Gviz

5 months ago dbsgtk • 0

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418

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rtracklayer UCSC Gviz

5 months ago yujin ▴ 10

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576

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rtracklayer Gviz

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by yujin ▴ 10

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713

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 7 months ago by Robert Ivanek ▴ 730 • written 7 months ago by Michael • 0

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527

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Gviz

updated 11 months ago by Robert Ivanek ▴ 730 • written 11 months ago by xiaofeiwang18266 ▴ 50

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1.7k

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Gviz coMET

16 months ago • updated 6 months ago Daniel E. Weeks ▴ 30

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1.3k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

Votes

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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