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Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
16 months ago • updated 6 months ago
Daniel E. Weeks
▴ 30
0
votes
3
replies
717
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 7 months ago by
Robert Ivanek
▴ 730 • written 7 months ago by
Michael
• 0
1
vote
3
replies
579
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 5 months ago by
Hervé Pagès
16k • written 5 months ago by
yujin
▴ 10
1
vote
3
replies
1.3k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 5 months ago by
Robert Ivanek
▴ 730 • written 3.0 years ago by
ltzhou
• 0
0
votes
2
replies
527
views
how to add annotation on individual track
Gviz
updated 11 months ago by
Robert Ivanek
▴ 730 • written 11 months ago by
xiaofeiwang18266
▴ 50
0
votes
1
reply
183
views
GC content track on GVIZ
Gviz
updated 9 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
ilaria.maurizio
• 0
0
votes
0
replies
329
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
5 months ago
dbsgtk
• 0
1
vote
0
replies
419
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
5 months ago
yujin
▴ 10
8 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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