Bioconductor Gviz

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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rtracklayer Gviz

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by yujin ▴ 10

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rtracklayer UCSC Gviz

5 months ago yujin ▴ 10

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DMRcate Gviz

updated 1 day ago by Tim Peters ▴ 170 • written 13 months ago by jose.ramirez1 ▴ 10

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Gviz

5 months ago dbsgtk • 0

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Gviz

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by ilaria.maurizio • 0

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 7 months ago by Robert Ivanek ▴ 730 • written 7 months ago by Michael • 0

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Gviz

updated 11 months ago by Robert Ivanek ▴ 730 • written 11 months ago by xiaofeiwang18266 ▴ 50

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Gviz coMET

16 months ago • updated 6 months ago Daniel E. Weeks ▴ 30

9 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

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Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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