Bioconductor Gviz

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925

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DMRcate Gviz

updated 2 days ago by Tim Peters ▴ 170 • written 14 months ago by jose.ramirez1 ▴ 10

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190

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Gviz

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by ilaria.maurizio • 0

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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336

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Gviz

5 months ago dbsgtk • 0

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428

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rtracklayer UCSC Gviz

5 months ago yujin ▴ 10

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587

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rtracklayer Gviz

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by yujin ▴ 10

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1.7k

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Gviz coMET

16 months ago • updated 6 months ago Daniel E. Weeks ▴ 30

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 7 months ago by Robert Ivanek ▴ 730 • written 7 months ago by Michael • 0

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533

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Gviz

updated 11 months ago by Robert Ivanek ▴ 730 • written 11 months ago by xiaofeiwang18266 ▴ 50

9 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0