Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
HDF5Array
•
reset
3
votes
3
replies
136
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
6 days ago • updated 1 day ago
jacques.imbert
• 0
4
votes
6
replies
628
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 5 weeks ago by
Akshay
• 0 • written 4 months ago by
Sarah
▴ 10
0
votes
2
replies
486
views
Error in H5Fopen
HDF5Array
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
1.5k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
19 months ago • updated 18 months ago
merv
▴ 120
1
vote
1
reply
1.1k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 19 months ago by
Peter Hickey
▴ 740 • written 19 months ago by
merv
▴ 120
4
votes
1
reply
2.1k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
19 months ago
merv
▴ 120
0
votes
0
replies
1.0k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
19 months ago
merv
▴ 120
4
votes
3
replies
950
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 2.5 years ago by
Mike Smith
★ 6.5k • written 2.5 years ago by
eric.kern13
▴ 20
4
votes
13
replies
1.8k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 6 months ago by
Hervé Pagès
16k • written 2.6 years ago by
Koki
▴ 10
4
votes
3
replies
1.1k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
2.8 years ago
Koki
▴ 10
3
votes
5
replies
1.3k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 2.9 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Pedro Baldoni
▴ 40
2
votes
3
replies
1.1k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 2.8 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Koki
▴ 10
0
votes
1
reply
862
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
2.9 years ago
Koki
▴ 10
9
votes
8
replies
1.4k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 2.9 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.1k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
2.9 years ago
Koki
▴ 10
1
vote
2
replies
1.1k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.0 years ago
Koki
▴ 10
2
votes
6
replies
1.5k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 2.9 years ago by
Hervé Pagès
16k • written 3.0 years ago by
Koki
▴ 10
6
votes
6
replies
1.7k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.2 years ago • updated 3.1 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.3k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
1.8k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.3k
views
error with HDF5Array
hdf5array
biocparallel
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
cath
▴ 30
4
votes
1
reply
2.3k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
rubi
▴ 110
22 results • Page
1 of 1
Recent ...
Replies
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Awards
• All
Popular Question
to
BioinfGuru
▴ 20
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Locations
• All
Switzerland,
just now
University of Applied Sciences Upper Austria, Hagenberg, Austria,
2 minutes ago
WEHI, Melbourne, Australia,
4 minutes ago
France,
8 minutes ago
Ireland,
24 minutes ago
Traffic: 863 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6