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Showing :
HDF5Array
•
reset
4
votes
6
replies
577
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 15 days ago by
Akshay
• 0 • written 4 months ago by
Sarah
▴ 10
4
votes
13
replies
1.7k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 5 months ago by
Hervé Pagès
16k • written 2.5 years ago by
Koki
▴ 10
0
votes
2
replies
430
views
Error in H5Fopen
HDF5Array
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
1.5k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
18 months ago
merv
▴ 120
1
vote
1
reply
1.1k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 19 months ago by
Peter Hickey
▴ 670 • written 19 months ago by
merv
▴ 120
4
votes
1
reply
2.0k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
19 months ago
merv
▴ 120
0
votes
0
replies
960
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
19 months ago
merv
▴ 120
4
votes
3
replies
932
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 2.5 years ago by
Mike Smith
★ 6.5k • written 2.5 years ago by
eric.kern13
▴ 20
4
votes
3
replies
1.0k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
2.7 years ago
Koki
▴ 10
2
votes
3
replies
1.1k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 2.8 years ago by
Hervé Pagès
16k • written 2.8 years ago by
Koki
▴ 10
3
votes
5
replies
1.3k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 2.8 years ago by
Hervé Pagès
16k • written 2.8 years ago by
Pedro Baldoni
▴ 40
9
votes
8
replies
1.4k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 2.8 years ago by
Hervé Pagès
16k • written 2.8 years ago by
Pedro Baldoni
▴ 40
0
votes
1
reply
840
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
2.8 years ago
Koki
▴ 10
2
votes
6
replies
1.5k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 2.8 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Koki
▴ 10
2
votes
4
replies
1.1k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
2.9 years ago
Koki
▴ 10
1
vote
2
replies
1.1k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
2.9 years ago
Koki
▴ 10
6
votes
6
replies
1.6k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.1 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.3k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
1.8k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.3k
views
error with HDF5Array
hdf5array
biocparallel
updated 5.8 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
cath
▴ 30
4
votes
1
reply
2.2k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
rubi
▴ 110
21 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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