Bioconductor HDF5Array

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hdf5array biocparallel

updated 5.9 years ago by Mike Smith ★ 6.5k • written 6.0 years ago by cath ▴ 30

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HDF5Array dgCMatrix

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by rubi ▴ 110

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HDF5Array SingleCellExperiment DelayedArray

19 months ago merv ▴ 120

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lumi illumina hdf5array

updated 5.7 years ago by James W. MacDonald 65k • written 5.7 years ago by Alexander Azarian ▴ 30

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HDF5Array DelayedArray

updated 6 months ago by Hervé Pagès 16k • written 2.6 years ago by Koki ▴ 10

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TileDBArray HDF5Array MultiAssayExperiment

3.2 years ago Thomas Sandmann ▴ 90

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HDF5Array SingleCellExperiment DelayedArray

19 months ago merv ▴ 120

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1.5k

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DelayedArray TileDBArray HDF5Array

updated 2.9 years ago by Hervé Pagès 16k • written 3.0 years ago by Koki ▴ 10

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DelayedArray HDF5Array

updated 2.9 years ago by Hervé Pagès 16k • written 2.9 years ago by Pedro Baldoni ▴ 40

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HDF5Array

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by sarah.williams1 ▴ 40

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HDF5Array DelayedArray

updated 2.9 years ago by Hervé Pagès 16k • written 2.9 years ago by Pedro Baldoni ▴ 40

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rhdf5 HDF5Array anndata SingleCellExperiment

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by merv ▴ 120

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DelayedArray HDF5Array

3.0 years ago Koki ▴ 10

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HDF5Array DelayedArray

2.9 years ago Koki ▴ 10

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1.1k

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bit64 HDF5Array DelayedArray

updated 2.8 years ago by Hervé Pagès 16k • written 2.9 years ago by Koki ▴ 10

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1.1k

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HDF5Array DelayedArray

2.8 years ago Koki ▴ 10

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1.0k

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HDF5Array SingleCellExperiment DelayedArray

19 months ago merv ▴ 120

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960

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HDF5Array

updated 2.5 years ago by Mike Smith ★ 6.5k • written 2.5 years ago by eric.kern13 ▴ 20

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868

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TileDBArray HDF5Array DelayedArray

2.9 years ago Koki ▴ 10

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643

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HDF5Array

updated 6 weeks ago by Akshay • 0 • written 4 months ago by Sarah ▴ 10

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495

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HDF5Array

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by gabriele.favaretto • 0

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164

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HDF5Array BiocGenerics BiocParallel Biobase

11 days ago • updated 6 days ago jacques.imbert • 0

22 results • Page 1 of 1

Recent ...

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Answer: Citation for edgeR user guide

Awards • All

Scholar to ATpoint ★ 4.0k