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18 months ago
michela
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18 months ago
michela
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Comment: what is the sampleFiles
by
James W. MacDonald
65k
I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.
Comment: Interaction Terms in DESeq2 - Shrinkage
by
Michael Love
41k
Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE.
Alternatively you can use ashr with a con…
Comment: A ComBat-seq issue: the covariates are confounded
by
schlumbohm
•
0
Dear ATpoint,
thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…
Comment: Memory errors using read.bismark?
by
Peter Hickey
▴
690
If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay.
The final object will be on the order of 250 GB in-me…
Comment: Memory errors using read.bismark?
by
Juan Higareda
•
0
Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…
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