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Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 8 months ago by
DrFizz
• 0 • written 8 months ago by
melander
• 0
2
votes
6
replies
1.3k
views
Help me find the bug
DESeq2
HELP
14 months ago
Michael
• 0
0
votes
4
replies
1.2k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 14 months ago by
Basti
▴ 770 • written 14 months ago by
Michael
• 0
0
votes
2
replies
704
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
18 months ago
michela
▴ 20
3
votes
4
replies
1.2k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
michela
▴ 20
0
votes
10
replies
1.5k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
18 months ago
michela
▴ 20
0
votes
1
reply
562
views
Data visualization
HELP
Data
updated 19 months ago by
Guido Hooiveld
★ 3.9k • written 19 months ago by
mcclurejenniferc
• 0
2
votes
4
replies
1.7k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 14 months ago by
Rodrigo
▴ 10 • written 2.1 years ago by
Jessica
▴ 10
1
vote
2
replies
2.4k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
2.4 years ago
lexi.kellington
• 0
1
vote
9
replies
4.1k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 22 months ago by
Sanatan
• 0 • written 3.0 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
1.3k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
3.0 years ago
hgalmoore
• 0
0
votes
1
reply
2.0k
views
setup microbiome error
help
software error
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
mafusa20
• 0
0
votes
2
replies
997
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
rm1238
• 0
1
vote
4
replies
5.9k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 7.1 years ago by
Guangchuang Yu
★ 1.2k • written 7.1 years ago by
Mataivic
• 0
4
votes
5
replies
2.5k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
knipehf
• 0
0
votes
7
replies
1.8k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
7.8 years ago
fischer87
• 0
0
votes
2
replies
1.3k
views
help me to analysis my data
limma
help
updated 8.4 years ago by
svlachavas
▴ 830 • written 8.4 years ago by
libya.tahani
• 0
17 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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