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Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
17 months ago
michela
▴ 20
1
vote
9
replies
4.0k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 22 months ago by
Sanatan
• 0 • written 3.0 years ago by
dorina.jamniczky
• 0
0
votes
7
replies
1.8k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
7.8 years ago
fischer87
• 0
2
votes
6
replies
1.3k
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Help me find the bug
DESeq2
HELP
13 months ago
Michael
• 0
4
votes
5
replies
2.4k
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edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
knipehf
• 0
1
vote
4
replies
5.8k
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ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 7.1 years ago by
Guangchuang Yu
★ 1.2k • written 7.1 years ago by
Mataivic
• 0
3
votes
4
replies
1.3k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
3.0 years ago
hgalmoore
• 0
2
votes
4
replies
1.7k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 13 months ago by
Rodrigo
▴ 10 • written 2.1 years ago by
Jessica
▴ 10
0
votes
4
replies
1.1k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
Michael
• 0
3
votes
4
replies
1.2k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
michela
▴ 20
0
votes
2
replies
1.3k
views
help me to analysis my data
limma
help
updated 8.3 years ago by
svlachavas
▴ 830 • written 8.3 years ago by
libya.tahani
• 0
0
votes
2
replies
986
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
rm1238
• 0
1
vote
2
replies
2.3k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
2.4 years ago
lexi.kellington
• 0
0
votes
2
replies
686
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
17 months ago
michela
▴ 20
0
votes
1
reply
2.0k
views
setup microbiome error
help
software error
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
mafusa20
• 0
0
votes
1
reply
550
views
Data visualization
HELP
Data
updated 19 months ago by
Guido Hooiveld
★ 3.9k • written 19 months ago by
mcclurejenniferc
• 0
0
votes
1
reply
304
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 7 months ago by
DrFizz
• 0 • written 7 months ago by
melander
• 0
17 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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