Bioconductor HTA

Showing : HTA • reset

votes

replies

1.1k

views

limma hta affy annotation

updated 5.0 years ago by James W. MacDonald 65k • written 5.0 years ago by RV ▴ 10

votes

replies

2.5k

views

hta customcdf

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by pbachali ▴ 50

votes

replies

1.3k

views

hta pd.hta.2.0 hta20sttranscriptcluster.db

updated 7.8 years ago by James W. MacDonald 65k • written 7.8 years ago by giroudpaul ▴ 40

votes

replies

5.5k

views

oligo customcdf HTA frma

updated 8.6 years ago by James W. MacDonald 65k • written 8.6 years ago by sanj ▴ 20

vote

replies

1.9k

views

affy qc simpleaffy HTA

updated 9.1 years ago by James W. MacDonald 65k • written 9.1 years ago by Guilherme Rocha ▴ 40

vote

replies

2.6k

views

microarray affy hta 2.0 junction

9.4 years ago • updated 9.3 years ago rbao.cri • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All

Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k