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HTA
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7
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6
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5.6k
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How to use brainarray custom cdf with oligo package?
oligo
customcdf
HTA
frma
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
sanj
▴ 20
1
vote
2
replies
2.6k
views
Use junction probesets (JUC) to detect alternative splicing on Affymetrix human HTA 2.0 arrays?
microarray
affy
hta
2.0
junction
9.4 years ago • updated 9.3 years ago
rbao.cri
• 0
0
votes
7
replies
2.5k
views
How to use brainarray custom cdf for HTA platform?
hta
customcdf
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
pbachali
▴ 50
1
vote
3
replies
1.9k
views
QC probes in HTA2-0
affy
qc
simpleaffy
HTA
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
Guilherme Rocha
▴ 40
3
votes
3
replies
1.3k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
giroudpaul
▴ 40
3
votes
5
replies
1.1k
views
HTA 2.0 Differential expression analysis - design question
limma
hta
affy
annotation
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
RV
▴ 10
6 results • Page
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Replies
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none
by
Michael Love
41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Votes
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
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