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HTSeq
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0
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2
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504
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
7 months ago • updated 6 months ago
yr542
• 0
1
vote
6
replies
952
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
15 months ago
abhay.kanodia
• 0
0
votes
1
reply
663
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 16 months ago by
Michael Love
41k • written 16 months ago by
abhay.kanodia
• 0
0
votes
2
replies
664
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 17 months ago by
Michael Love
41k • written 17 months ago by
Paola
• 0
0
votes
2
replies
1.0k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
eric33150
• 0
12
votes
4
replies
4.3k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.2 years ago by
Gordon Smyth
50k • written 6.8 years ago by
wd
▴ 30
0
votes
1
reply
1.4k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
7.1 years ago
mat.lesche
▴ 90
1
vote
6
replies
1.9k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
sakura.nussbaum
▴ 10
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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