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HTSeq
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0
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2
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
8 months ago • updated 7 months ago
yr542
• 0
1
vote
6
replies
985
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
16 months ago • updated 15 months ago
abhay.kanodia
• 0
0
votes
1
reply
687
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 16 months ago by
Michael Love
41k • written 17 months ago by
abhay.kanodia
• 0
0
votes
2
replies
692
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 17 months ago by
Michael Love
41k • written 18 months ago by
Paola
• 0
0
votes
2
replies
1.1k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 4.1 years ago by
Martin Morgan
25k • written 4.2 years ago by
eric33150
• 0
12
votes
4
replies
4.4k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.3 years ago by
Gordon Smyth
50k • written 6.9 years ago by
wd
▴ 30
0
votes
1
reply
1.5k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
7.2 years ago
mat.lesche
▴ 90
1
vote
6
replies
1.9k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
sakura.nussbaum
▴ 10
8 results • Page
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Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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