Bioconductor HTSeq

Showing : HTSeq • reset

votes

replies

532

views

DEXSeq HTSeq R

8 months ago • updated 7 months ago yr542 • 0

vote

replies

983

views

DESeq2 microRNA HTSeq

16 months ago • updated 15 months ago abhay.kanodia • 0

votes

687

views

DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 16 months ago by Michael Love 41k • written 17 months ago by abhay.kanodia • 0

votes

replies

690

views

DESeq2 htseq DEGseq RNASeq read

updated 17 months ago by Michael Love 41k • written 17 months ago by Paola • 0

votes

replies

1.1k

views

software error HTSeq installation

updated 4.1 years ago by Martin Morgan 25k • written 4.1 years ago by eric33150 • 0

votes

replies

4.4k

views

voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

votes

1.5k

views

DEXSeq dexseq_count htseq

7.2 years ago mat.lesche ▴ 90

vote

replies

1.9k

views

HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All