Bioconductor HTSeq

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1.9k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by sakura.nussbaum ▴ 10

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989

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DESeq2 microRNA HTSeq

16 months ago abhay.kanodia • 0

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4.4k

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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540

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DEXSeq HTSeq R

8 months ago • updated 7 months ago yr542 • 0

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1.1k

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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693

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DESeq2 htseq DEGseq RNASeq read

updated 17 months ago by Michael Love 41k • written 18 months ago by CP • 0

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1.5k

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DEXSeq dexseq_count htseq

7.2 years ago mat.lesche ▴ 90

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691

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 17 months ago by Michael Love 41k • written 17 months ago by abhay.kanodia • 0

8 results • Page 1 of 1

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

I don't really have any additional suggestion here.

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…

Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k

The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Votes

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Awards • All

Scholar to Michael Love 41k