Bioconductor HTSeq

Showing : HTSeq • reset

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4.4k

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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1.9k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by sakura.nussbaum ▴ 10

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1.5k

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DEXSeq dexseq_count htseq

7.2 years ago mat.lesche ▴ 90

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1.1k

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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990

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DESeq2 microRNA HTSeq

16 months ago abhay.kanodia • 0

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693

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DESeq2 htseq DEGseq RNASeq read

updated 17 months ago by Michael Love 41k • written 18 months ago by CP • 0

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692

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 17 months ago by Michael Love 41k • written 17 months ago by abhay.kanodia • 0

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540

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DEXSeq HTSeq R

8 months ago • updated 7 months ago yr542 • 0

8 results • Page 1 of 1

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Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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