Bioconductor HiC-DC+

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 23 months ago by merve.sahn • 0 • written 3.4 years ago by mtS • 0

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HiC-DC+ HiCDCPlus BiocParallel

updated 3.1 years ago by koushik • 0 • written 3.4 years ago by Tay ▴ 10

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446

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HiC-DC+ HiCDCPlus

updated 10 months ago by merve.sahn • 0 • written 16 months ago by Yue • 0

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HiC-DC+ HiCDCPlus

updated 23 months ago by merve.sahn • 0 • written 2.7 years ago by Hannah • 0

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HiC-DC+ HiCDCPlus

updated 20 months ago by scott • 0 • written 2.1 years ago by 1037144675 • 0

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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