Bioconductor HiC-DC+

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HiC-DC+ HiCDCPlus BiocParallel

updated 3.1 years ago by koushik • 0 • written 3.4 years ago by Tay ▴ 10

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 23 months ago by merve.sahn • 0 • written 3.4 years ago by mtS • 0

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446

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HiC-DC+ HiCDCPlus

updated 10 months ago by merve.sahn • 0 • written 16 months ago by Yue • 0

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646

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HiC-DC+ HiCDCPlus

updated 20 months ago by scott • 0 • written 2.1 years ago by 1037144675 • 0

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HiC-DC+ HiCDCPlus

updated 23 months ago by merve.sahn • 0 • written 2.7 years ago by Hannah • 0

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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