Showing : HiC • reset
0
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2
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276
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Java error while running HiCDC overview code
JuicerTools HiC HiCDCPlus Java Juicer
written 4 months ago by • 0
0
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0
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773
views
Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
22 months ago xubeisi • 0
0
votes
0
replies
792
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER HiCUP BAM HiC
2.4 years ago Ankit ▴ 20
0
votes
3
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821
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus HiC-DC+ HiCcompare HiC
updated 23 months ago by • 0 • written 3.4 years ago by • 0
0
votes
0
replies
539
views
Looking for a package to efficiently plot Hi-C contact maps
HiC hicrep HiCcompare
3.5 years ago changxu.fan ▴ 20
1
vote
7
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1.6k
views
problem recasting InteractionSet into a DGEList
diffHic GenomicInteractions edgeR HiC cooler
updated 3.6 years ago by ★ 28k • written 3.6 years ago by ▴ 30
0
votes
1
reply
817
views
How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 4.0 years ago by ★ 28k • written 4.0 years ago by • 0
0
votes
1
reply
848
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare HiC cool
updated 4.5 years ago by ★ 3.9k • written 4.5 years ago by • 0
0
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3
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1.5k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.3 years ago by • 0 • written 5.3 years ago by • 0
0
votes
9
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1.4k
views
from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 10
0
votes
1
reply
892
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
5.4 years ago • updated 5.3 years ago mictadlo ▴ 10
1
vote
1
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1.3k
views
extract HiC contacts for a given BEDPE set of coordinates
hic diffhic chromatin bedpe
updated 5.6 years ago by ★ 28k • written 5.6 years ago by • 0
2
votes
1
reply
1.2k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 20
0
votes
8
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1.6k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic hic
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 20
2
votes
2
replies
1.4k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic hicpro hic
6.7 years ago sergio.espeso-gil • 0
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC hic
8.6 years ago Nathan Sheffield ▴ 10
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC gothic diffhic HiC
8.6 years ago Bogdan ▴ 670
17 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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