Bioconductor HiC

Showing : HiC • reset

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283

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JuicerTools HiC HiCDCPlus Java Juicer

written 4 months ago by IsMM • 0

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786

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HiC Epigenetics HiCHIP ChIPSeq

22 months ago xubeisi • 0

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801

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HOMER HiCUP BAM HiC

2.4 years ago Ankit ▴ 20

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828

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 24 months ago by merve.sahn • 0 • written 3.5 years ago by mtS • 0

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544

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HiC hicrep HiCcompare

3.5 years ago changxu.fan ▴ 20

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1.6k

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by Marco Blanchette ▴ 30

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823

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

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851

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HiCompare HiC cool

updated 4.6 years ago by Kevin Blighe ★ 3.9k • written 4.6 years ago by c.chakraborty • 0

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1.5k

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hic

updated 5.3 years ago by bioparticles.melly • 0 • written 5.3 years ago by m.t.lorenc • 0

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1.5k

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diffhic gothic hicup hic-c hic

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mictadlo ▴ 10

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898

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hic diffhic gothic hicup hic-c

5.4 years ago mictadlo ▴ 10

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1.3k

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hic diffhic chromatin bedpe

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by gryderart • 0

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.6k

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diffhic hic

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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diffhic hicpro hic

6.7 years ago sergio.espeso-gil • 0

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1.6k

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GOTHiC hic

8.6 years ago Nathan Sheffield ▴ 10

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2.4k

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HiTC gothic diffhic HiC

8.6 years ago Bogdan ▴ 670

17 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0