Showing : HiCDCPlus • reset
3
votes
7
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2.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+ HiCDCPlus BiocParallel
updated 3.1 years ago by • 0 • written 3.4 years ago by ▴ 10
0
votes
2
replies
277
views
Java error while running HiCDC overview code
JuicerTools HiC HiCDCPlus Java Juicer
written 4 months ago by • 0
0
votes
3
replies
821
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus HiC-DC+ HiCcompare HiC
updated 23 months ago by • 0 • written 3.4 years ago by • 0
0
votes
1
reply
772
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus BSgenome.Hsapiens.UCSC.hg38
updated 10 months ago by • 0 • written 16 months ago by • 0
0
votes
1
reply
446
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+ HiCDCPlus
updated 10 months ago by • 0 • written 16 months ago by • 0
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd HiCDCPlus
updated 13 months ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
383
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 10 months ago by • 0 • written 12 months ago by • 0
0
votes
1
reply
623
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+ HiCDCPlus
updated 23 months ago by • 0 • written 2.7 years ago by • 0
0
votes
2
replies
646
views
Could I use HiCDCPlus in plant genome?
HiC-DC+ HiCDCPlus
updated 20 months ago by • 0 • written 2.1 years ago by • 0
0
votes
1
reply
437
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 10 months ago by • 0 • written 10 months ago by • 0
0
votes
0
replies
111
views
HiCDCPlus differential interaction error
HiCDCPlus
10 weeks ago Irene • 0
0
votes
1
reply
739
views
HiCDCPlus with NO replicates
hicdcdiff HiCDCPlus
updated 23 months ago by • 0 • written 2.3 years ago by ▴ 10
12 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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