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HiCDCPlus
•
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3
votes
7
replies
2.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.1 years ago by
koushik
• 0 • written 3.4 years ago by
Tay
▴ 10
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 13 months ago by
Michelle
• 0 • written 2.4 years ago by
franceschini.gianmarco
• 0
0
votes
3
replies
821
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 23 months ago by
merve.sahn
• 0 • written 3.4 years ago by
mtS
• 0
0
votes
1
reply
773
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 10 months ago by
merve.sahn
• 0 • written 16 months ago by
Yue
• 0
0
votes
1
reply
739
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 23 months ago by
merve.sahn
• 0 • written 2.3 years ago by
ta_awwad
▴ 10
0
votes
2
replies
646
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 20 months ago by
scott
• 0 • written 2.1 years ago by
1037144675
• 0
0
votes
1
reply
623
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 23 months ago by
merve.sahn
• 0 • written 2.7 years ago by
Hannah
• 0
0
votes
1
reply
446
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 16 months ago by
Yue
• 0
0
votes
1
reply
437
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 11 months ago by
ehamrud
• 0
0
votes
1
reply
383
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 12 months ago by
mlin18
• 0
0
votes
2
replies
279
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 4 months ago by
IsMM
• 0
0
votes
0
replies
111
views
HiCDCPlus differential interaction error
HiCDCPlus
10 weeks ago
Irene
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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