Showing : HiTC • reset
0
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6
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368
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HiTC problem exporting to my5C
HiTC HiC-Pro
2.2 years ago sergio.espeso-gil • 0
1
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3
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536
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A/B compartments computation: control settings
HiTC
updated 10 months ago by • 0 • written 2.9 years ago by ▴ 30
1
vote
5
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609
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visualize Hi-C .cool file in R
Hi-C HiTC
3.8 years ago ta_awwad ▴ 10
0
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2
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620
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Gene Density computation in pca.hic
HiTC
3.9 years ago cath ▴ 30
0
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5
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817
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HiTC importC not working
HiTC IRanges windows debian
updated 4.2 years ago by ▴ 260 • written 4.2 years ago by • 0
3
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5
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783
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normLGF yields non-symetric matrices
HiTC
updated 5.1 years ago by ▴ 260 • written 5.1 years ago by ▴ 10
1
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10
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1.4k
views
FourC object from scratch
hi-c HiTC fourcseq
6.6 years ago • updated 6.5 years ago Nicolas Servant ▴ 260
0
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0
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806
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FourC object from scratch
hic-c hitc fourcseq
6.6 years ago Nicolas Servant ▴ 260
4
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20
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1.4k
views
scaling loess curves
HiTC gothic diffhic HiC
6.7 years ago Bogdan ▴ 640
0
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0
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627
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normalization method for 5C
HiTC
6.7 years ago Bogdan ▴ 640
0
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0
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767
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Problem importing 5C data
importing HiTC
7.1 years ago gugpuccio ▴ 10
0
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1
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2.1k
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biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by ▴ 100
0
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4
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852
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genome_intervals and GRange objects/HiTC package
Annotation HiTC Annotation HiTC
updated 9.3 years ago by ★ 6.7k • written 9.3 years ago by ▴ 170
0
votes
1
reply
920
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HiTC: problem with HTClist
HiTC HiTC
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 170
14 results • Page 1 of 1
Recent ...
Replies
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2 by Michael Love 36k
Note sure why it's having difficulty converging. You could use apeglm?
Comment: performing the differential binding in ChIP-seq by ATpoint ★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA by Akira • 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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