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HiTC
•
reset
0
votes
3
replies
840
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
22 months ago • updated 21 months ago
shikha
• 0
1
vote
3
replies
1.2k
views
A/B compartments computation: control settings
HiTC
updated 2.7 years ago by
ahmed.abbaselmahdi
• 0 • written 4.7 years ago by
Konstantin Okonechnikov
▴ 40
0
votes
6
replies
863
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.1 years ago
sergio.espeso-gil
• 0
1
vote
5
replies
1.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.7 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
Gene Density computation in pca.hic
HiTC
5.8 years ago
cath
▴ 30
0
votes
5
replies
1.5k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.1 years ago by
Nicolas Servant
▴ 260 • written 6.1 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.3k
views
normLGF yields non-symetric matrices
HiTC
updated 7.0 years ago by
Nicolas Servant
▴ 260 • written 7.0 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.1k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.3 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.1k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.5 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago • updated 8.5 years ago
Bogdan
▴ 670
0
votes
0
replies
839
views
normalization method for 5C
HiTC
8.6 years ago
Bogdan
▴ 670
0
votes
0
replies
1.0k
views
Problem importing 5C data
importing
HiTC
9.0 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.5k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.0 years ago by
Dan Tenenbaum
★ 8.2k • written 11.0 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.3k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 11.1 years ago by
Valerie Obenchain
★ 6.8k • written 11.1 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.2k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 11.2 years ago by
Martin Morgan
25k • written 11.1 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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