updated 10 months ago by
ahmed.abbaselmahdi
•
0
•
written 2.9 years ago by
Konstantin Okonechnikov
▴
30
1
vote
3
replies
537
views
Recent ...
Replies
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴
10
Hi Michael,
I'm using the "contrast" parameter, so I cannot use apeglm with that, as far as I know. The "coef" will not allow me to do eve…
Comment: Transcript-level differential expression using DESeq2
by
Michael Love
36k
So the way the p-values are generated (non-parametric) you won't get a ranking among these that are highly significant. You can use logFC. …
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
Michael Love
36k
Note sure why it's having difficulty converging.
You could use apeglm?
Comment: performing the differential binding in ChIP-seq
by
ATpoint
★
1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2
by
Ekta
•
0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Votes
Awards
• All
Scholar to
Gordon Smyth
45k
Popular Question to
andrebolerbarros
▴
10
Scholar to
James W. MacDonald
59k
Scholar to
Guido Hooiveld
★
3.2k
Scholar to
Kevin Blighe
3.5k
Locations
• All
India, just now
Switzerland, 23 minutes ago
Portugal, 30 minutes ago
United States, 39 minutes ago
Switzerland, 1 hour ago
India, just now
Switzerland, 23 minutes ago
Portugal, 30 minutes ago
United States, 39 minutes ago
Switzerland, 1 hour ago
Traffic: 314 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6