Bioconductor HiTC

Showing : HiTC • reset

votes

replies

2.4k

views

HiTC gothic diffhic HiC

8.6 years ago Bogdan ▴ 670

vote

replies

2.1k

views

hi-c HiTC fourcseq

8.5 years ago • updated 8.4 years ago Nicolas Servant ▴ 260

votes

replies

1.4k

views

HiTC

updated 7.1 years ago by Nicolas Servant ▴ 260 • written 7.1 years ago by enrique.vidal ▴ 10

votes

replies

1.6k

views

HiTC IRanges windows debian

updated 6.1 years ago by Nicolas Servant ▴ 260 • written 6.1 years ago by René Wiegandt • 0

votes

1.2k

views

HiTC HiTC

updated 11.2 years ago by Martin Morgan 25k • written 11.2 years ago by Hermann Norpois ▴ 170

votes

replies

1.3k

views

Annotation HiTC Annotation HiTC

updated 11.2 years ago by Valerie Obenchain ★ 6.8k • written 11.2 years ago by Hermann Norpois ▴ 170

votes

2.6k

views

BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.1 years ago by Dan Tenenbaum ★ 8.2k • written 11.1 years ago by Wim Kreinen ▴ 100

vote

replies

1.3k

views

HiTC

updated 2.8 years ago by ahmed.abbaselmahdi • 0 • written 4.8 years ago by Konstantin Okonechnikov ▴ 40

votes

replies

857

views

HiTC

8.7 years ago Bogdan ▴ 670

votes

replies

1.0k

views

importing HiTC

9.0 years ago gugpuccio ▴ 10

votes

replies

1.1k

views

HiTC

5.9 years ago cath ▴ 30

vote

replies

1.4k

views

Hi-C HiTC

5.8 years ago ta_awwad ▴ 10

votes

replies

879

views

HiTC importC sparseMatrix

23 months ago • updated 22 months ago shikha • 0

votes

replies

893

views

HiTC HiC-Pro

4.2 years ago sergio.espeso-gil • 0

votes

replies

1.2k

views

hic-c hitc fourcseq

8.5 years ago Nicolas Servant ▴ 260

15 results • Page 1 of 1

Recent ...

Replies

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Supporter to JKim • 0