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HiTC
•
reset
0
votes
3
replies
867
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
22 months ago
shikha
• 0
0
votes
6
replies
891
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.2 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
1.3k
views
A/B compartments computation: control settings
HiTC
updated 2.8 years ago by
ahmed.abbaselmahdi
• 0 • written 4.8 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
1.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.8 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
Gene Density computation in pca.hic
HiTC
5.9 years ago
cath
▴ 30
0
votes
5
replies
1.5k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.1 years ago by
Nicolas Servant
▴ 260 • written 6.1 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.4k
views
normLGF yields non-symetric matrices
HiTC
updated 7.0 years ago by
Nicolas Servant
▴ 260 • written 7.0 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.1k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.5 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago
Bogdan
▴ 670
0
votes
0
replies
850
views
normalization method for 5C
HiTC
8.6 years ago
Bogdan
▴ 670
0
votes
0
replies
1.0k
views
Problem importing 5C data
importing
HiTC
9.0 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.3k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.2k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Robert Castelo
★ 3.2k
Popular Question
to
James W. MacDonald
65k
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shepherl
3.8k
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to
BioinfGuru
▴ 30
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Gordon Smyth
50k
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