Showing : HtqPCR • reset
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2.2k
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HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 11.8 years ago by ★ 2.0k • written 11.9 years ago by ▴ 40
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4
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1.5k
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Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
13.9 years ago Heidi Dvinge ★ 2.0k
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4
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1.2k
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HTqPCR questions
qPCR HTqPCR qPCR HTqPCR
updated 13.3 years ago by ▴ 330 • written 13.3 years ago by ★ 2.0k
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2
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1.2k
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HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
9.4 years ago samantha.smith-4 • 0
1
vote
2
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1.3k
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No differential expression with limmaCtData possible
limma htqpcr
6.4 years ago h.roest • 0
0
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4
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2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR HTqPCR qPCR HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 30
0
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3
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983
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
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2
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2.0k
views
HTqPCR - how to read data file with multiple samples
HTqPCR HTqPCR
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ▴ 50
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4
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1.0k
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HTqPCR and factorial design
qPCR HTqPCR qPCR HTqPCR
updated 14.2 years ago by ★ 2.0k • written 14.3 years ago by ▴ 810
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2
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1.9k
views
reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
1
vote
1
reply
1.3k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.2 years ago by 50k • written 8.4 years ago by ▴ 40
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5
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1.3k
views
HTqPCR normalization issues - third posting
Normalization HTqPCR Normalization HTqPCR
updated 10.5 years ago by 65k • written 10.5 years ago by ★ 13k
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1
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1.4k
views
Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 7.6 years ago by • 0 • written 9.4 years ago by ▴ 830
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1
reply
1.2k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
8.7 years ago julio.c.silver • 0
0
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1
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1.0k
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HTqPCR normalization issue ?
Normalization HTqPCR Normalization HTqPCR
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ★ 13k
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4
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1.4k
views
HTqPCR normalization issues - third posting
Normalization HTqPCR Normalization HTqPCR
updated 10.5 years ago by ★ 1.1k • written 10.5 years ago by ▴ 330
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.2 years ago by ▴ 40 • written 7.5 years ago by ▴ 20
0
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4
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1.4k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 11.8 years ago by ▴ 340 • written 11.8 years ago by ★ 2.0k
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2
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1.5k
views
HTqPCR : readCtData problem?
miRNA qPCR HTqPCR miRNA qPCR HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
0
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1
reply
1.1k
views
HTqPCR
qPCR PROcess HTqPCR qPCR PROcess HTqPCR
12.7 years ago • updated 12.6 years ago Heidi Dvinge ★ 2.0k
0
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1
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1.8k
views
Problem with function limmaCtData in HTqPCR package: "leading minor of order 2 is not positive definite"
HTqPCR HTqPCR
updated 13.8 years ago by ★ 2.0k • written 13.8 years ago by ▴ 10
0
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3
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1.2k
views
HTqPCR plotting groups of interest
HTqPCR HTqPCR
updated 11.8 years ago by ★ 2.0k • written 11.8 years ago by ▴ 340
0
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2
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2.0k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 20
0
votes
1
reply
1.0k
views
Post-hoc correction fro htQPCR
HTqPCR HTqPCR
updated 13.3 years ago by ▴ 330 • written 13.3 years ago by ★ 2.0k
0
votes
1
reply
1.5k
views
HTqPCR question
HTqPCR HTqPCR
updated 13.4 years ago by ★ 2.0k • written 13.4 years ago by ▴ 340
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
0
votes
1
reply
1.4k
views
HTqPCR - how to read data file with multiple samples
HTqPCR a4 HTqPCR a4
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 320
0
votes
5
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1.5k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 50
0
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2
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1.2k
views
HTqPCR - limmaCtData using samples with different number of replicates?
HTqPCR HTqPCR
updated 11.8 years ago by ★ 2.0k • written 11.8 years ago by ▴ 60
1
vote
7
replies
1.7k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 8.7 years ago by 50k • written 8.7 years ago by • 0
0
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1
reply
851
views
bioconductor implementations to find rank invariant genes
Normalization HTqPCR Normalization HTqPCR
updated 11.7 years ago by ★ 2.0k • written 11.7 years ago by ▴ 360
0
votes
2
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1.1k
views
HTqPCR: weird error and wrong feature positions after limma.CtData
HTqPCR HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 810
0
votes
1
reply
1.8k
views
Problems creating a qPCRset object in "HTqPCR"
HTqPCR HTqPCR
12.9 years ago Peter Davidsen ▴ 210
0
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1
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1.0k
views
sir
Cancer cycle HTqPCR Cancer cycle HTqPCR
updated 13.9 years ago by ▴ 40 • written 14.0 years ago by ★ 2.0k
0
votes
1
reply
994
views
HTqPCR
qPCR limma HTqPCR qPCR limma HTqPCR
11.9 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
931
views
about HTqPCR
miRNA Normalization GO HTqPCR miRNA Normalization GO HTqPCR
12.9 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
892
views
HTqPCR
HTqPCR HTqPCR
updated 12.8 years ago by ★ 2.0k • written 12.8 years ago by ▴ 320
0
votes
1
reply
1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ★ 3.9k
0
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2
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1.5k
views
Compatibility of Biorad cfx files to HTqPCR?
qPCR HTqPCR qPCR HTqPCR
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
PCR efficiency correction with HTqPCR
qPCR GO Prostate HTqPCR qPCR GO Prostate HTqPCR
updated 12.6 years ago by ★ 2.0k • written 12.6 years ago by ▴ 20
0
votes
2
replies
814
views
HTqPCR (plotCtOverview) problem
HTqPCR HTqPCR
updated 14.0 years ago by ▴ 420 • written 14.0 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
TLDA data
Clustering Cancer PROcess cycle HTqPCR Clustering Cancer PROcess cycle HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 40
0
votes
7
replies
2.1k
views
readCtData() in HTqPCR with matrix of multiple samples
HTqPCR HTqPCR
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 350
0
votes
1
reply
986
views
HTqPCR and Biobase's eSet
Biobase HTqPCR Biobase HTqPCR
updated 12.4 years ago by ▴ 300 • written 12.4 years ago by ★ 2.3k
0
votes
5
replies
1.7k
views
HTqPCR: new qPCRset objects problem
HTqPCR HTqPCR
updated 13.2 years ago by ★ 2.0k • written 13.2 years ago by ▴ 30
0
votes
8
replies
1.5k
views
HTqPCR problems
HTqPCR HTqPCR
updated 11.8 years ago by ★ 2.0k • written 11.8 years ago by ▴ 340
0
votes
2
replies
879
views
HTqPCR version and plotCtOverview scaling errors
HTqPCR HTqPCR
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 420
0
votes
1
reply
1.4k
views
HTqPCR problem with replicates
ddCt HTqPCR ddCt HTqPCR
updated 12.3 years ago by ★ 2.0k • written 12.3 years ago by ▴ 320
0
votes
2
replies
1.3k
views
HTqPCR
HTqPCR HTqPCR
updated 12.0 years ago by ★ 2.0k • written 12.0 years ago by ▴ 200
0
votes
1
reply
1.6k
views
Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering HTqPCR Clustering HTqPCR
updated 11.5 years ago by ▴ 60 • written 11.5 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
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You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
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Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
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I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
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