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HtqPCR
•
reset
3
votes
4
replies
4.1k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 3.4 years ago by
Ming
▴ 380 • written 4.2 years ago by
enricoferrero
▴ 680
3
votes
1
reply
1.6k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 8.2 years ago by
henrik.seidel
▴ 40 • written 8.4 years ago by
julius
▴ 20
3
votes
7
replies
2.4k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
8.2 years ago
henrik.seidel
▴ 40
2
votes
2
replies
1.3k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
Nithisha
▴ 10
2
votes
1
reply
1.5k
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
11.1 years ago
Cornwell, Adam
▴ 110
1
vote
0
replies
2.2k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR
readCtData
Heidi Dvinge
8.9 years ago
virginia.claudio
▴ 10
1
vote
5
replies
971
views
Manual creation of qPCRset does not work
bug
nondetects
HTqPCR
updated 17 months ago by
Nat.Nataren
• 0 • written 18 months ago by
Ed Siefker
▴ 230
1
vote
7
replies
2.0k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma
ndups
htqpcr
software error
updated 9.6 years ago by
Gordon Smyth
52k • written 9.6 years ago by
julio.c.silver
• 0
1
vote
1
reply
1.5k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 4.2 years ago by
Gordon Smyth
52k • written 9.3 years ago by
sharvari gujja
▴ 40
1
vote
2
replies
1.6k
views
No differential expression with limmaCtData possible
limma
htqpcr
7.4 years ago
h.roest
• 0
0
votes
0
replies
1.8k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
12.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 15.2 years ago by
Naomi Altman
★ 6.0k • written 15.2 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.6k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
a4
HTqPCR
a4
updated 15.1 years ago by
Heidi Dvinge
★ 2.0k • written 15.1 years ago by
marco fabbri
▴ 320
0
votes
0
replies
1.2k
views
qPCR plates containing multiple samples in HTqPCR
qPCR
HTqPCR
qPCR
HTqPCR
15.1 years ago
Heidi Dvinge
★ 2.0k
0
votes
4
replies
1.2k
views
HTqPCR and factorial design
qPCR
HTqPCR
qPCR
HTqPCR
updated 15.2 years ago by
Heidi Dvinge
★ 2.0k • written 15.2 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.4k
views
HTqPCR useful for ChIP data ?
Preprocessing
Clustering
HTqPCR
Preprocessing
Clustering
HTqPCR
updated 2.4 years ago by
Javier
• 0 • written 13.2 years ago by
Guillaume Tiberi
▴ 10
0
votes
1
reply
1.2k
views
Post-hoc correction fro htQPCR
HTqPCR
HTqPCR
updated 14.2 years ago by
alessandro.guffanti@genomnia.com
▴ 330 • written 14.2 years ago by
Heidi Dvinge
★ 2.0k
0
votes
2
replies
2.2k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
HTqPCR
updated 15.2 years ago by
Heidi Dvinge
★ 2.0k • written 15.2 years ago by
Adam Kiezun
▴ 50
0
votes
1
reply
1.7k
views
TLDA data
Clustering
Cancer
PROcess
cycle
HTqPCR
Clustering
Cancer
PROcess
cycle
HTqPCR
updated 14.8 years ago by
Heidi Dvinge
★ 2.0k • written 14.8 years ago by
deepak roshan
▴ 40
0
votes
4
replies
1.7k
views
Reading in data with HTqPCR
qPCR
Cancer
cycle
HTqPCR
qPCR
Cancer
cycle
HTqPCR
14.8 years ago
Heidi Dvinge
★ 2.0k
0
votes
4
replies
2.8k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR
HTqPCR
qPCR
HTqPCR
updated 14.8 years ago by
Heidi Dvinge
★ 2.0k • written 14.8 years ago by
V. Oostra
▴ 30
0
votes
1
reply
1.9k
views
Problem with function limmaCtData in HTqPCR package: "leading minor of order 2 is not positive definite"
HTqPCR
HTqPCR
updated 14.7 years ago by
Heidi Dvinge
★ 2.0k • written 14.7 years ago by
Bass, Kevin
▴ 10
0
votes
0
replies
1.0k
views
HTqPCR
HTqPCR
HTqPCR
14.4 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.3k
views
HTqPCR problem
qPCR
GO
HTqPCR
qPCR
GO
HTqPCR
14.4 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.6k
views
HTqPCR question
HTqPCR
HTqPCR
updated 14.3 years ago by
Heidi Dvinge
★ 2.0k • written 14.3 years ago by
Simon Melov
▴ 340
0
votes
0
replies
761
views
HTqPCR problem
Cancer
HTqPCR
Cancer
HTqPCR
14.2 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.6k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR)
qPCR
HTqPCR
qPCR
HTqPCR
14.2 years ago
Alexander Williams
▴ 20
0
votes
0
replies
2.0k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR) (Alexander Williams)
qPCR
HTqPCR
qPCR
HTqPCR
14.2 years ago
Alexander Williams
▴ 20
0
votes
0
replies
1.2k
views
HTqPCR package: plotCtDensity and modification in bandwith parameter
HTqPCR
HTqPCR
14.1 years ago
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
907
views
HTqPCR query
GO
HTqPCR
GO
HTqPCR
14.1 years ago
Heidi Dvinge
★ 2.0k
0
votes
3
replies
1.2k
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 15.2 years ago by
Naomi Altman
★ 6.0k • written 15.2 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.1k
views
HTqPCR - TLDA analysis doubt
HTqPCR
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.3k
views
HTqPCR: weird error and wrong feature positions after limma.CtData
HTqPCR
HTqPCR
updated 14.9 years ago by
Heidi Dvinge
★ 2.0k • written 14.9 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
2.0k
views
Problems creating a qPCRset object in "HTqPCR"
HTqPCR
HTqPCR
13.8 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
823
views
colors in plotCtCategory heatmap
Category
HTqPCR
Category
HTqPCR
13.8 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.2k
views
sir
Cancer
cycle
HTqPCR
Cancer
cycle
HTqPCR
updated 14.8 years ago by
deepak roshan
▴ 40 • written 14.9 years ago by
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.0k
views
HTqPCR
HTqPCR
HTqPCR
updated 13.8 years ago by
Heidi Dvinge
★ 2.0k • written 13.8 years ago by
marco fabbri
▴ 320
0
votes
1
reply
1.4k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA
microRNA
HTqPCR
miRNA
microRNA
HTqPCR
updated 13.6 years ago by
Heidi Dvinge
★ 2.0k • written 13.6 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
1.3k
views
HTqPCR
qPCR
PROcess
HTqPCR
qPCR
PROcess
HTqPCR
13.6 years ago • updated 13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.2k
views
PCR efficiency correction with HTqPCR
qPCR
GO
Prostate
HTqPCR
qPCR
GO
Prostate
HTqPCR
updated 13.5 years ago by
Heidi Dvinge
★ 2.0k • written 13.5 years ago by
Max Mariasegaram
▴ 20
0
votes
0
replies
1.4k
views
doubt in HTqPCR
Cancer
ddCt
cycle
HTqPCR
ASSIGN
Cancer
ddCt
cycle
HTqPCR
ASSIGN
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
946
views
Binomial regression of HTqPCR data
Regression
HTqPCR
Regression
HTqPCR
13.4 years ago
Christopher Howerton
▴ 40
0
votes
1
reply
1.2k
views
HTqPCR and Biobase's eSet
Biobase
HTqPCR
Biobase
HTqPCR
updated 13.3 years ago by
james perkins
▴ 300 • written 13.3 years ago by
Laurent Gautier
★ 2.3k
0
votes
0
replies
861
views
HTqPCR and Biobase's eSet
Biobase
nudge
HTqPCR
Biobase
nudge
HTqPCR
13.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
930
views
HTqPCR
HTqPCR
HTqPCR
13.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.0k
views
HTqPCR useful for ChIP data ?
HTqPCR
HTqPCR
13.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.6k
views
HTqPCR problem with replicates
ddCt
HTqPCR
ddCt
HTqPCR
updated 13.2 years ago by
Heidi Dvinge
★ 2.0k • written 13.2 years ago by
marco fabbri
▴ 320
0
votes
0
replies
1.1k
views
File formats for high throughput qPCR data
qPCR
HTqPCR
qPCR
HTqPCR
13.1 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.5k
views
HTqPCR
HTqPCR
HTqPCR
updated 12.9 years ago by
Heidi Dvinge
★ 2.0k • written 12.9 years ago by
wenhuo hu
▴ 200
0
votes
0
replies
918
views
HTqPCR normalization issues again
Normalization
HTqPCR
Normalization
HTqPCR
11.5 years ago
Guest User
★ 13k
50 results • Page
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Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
by
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If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
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★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
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We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
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It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
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