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HtqPCR
•
reset
3
votes
4
replies
2.9k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 2.5 years ago by
Ming
▴ 380 • written 3.2 years ago by
enricoferrero
▴ 660
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.2 years ago by
henrik.seidel
▴ 40 • written 7.5 years ago by
julius
▴ 20
3
votes
7
replies
2.0k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
7.2 years ago
henrik.seidel
▴ 40
2
votes
2
replies
1.0k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
Nithisha
▴ 10
2
votes
1
reply
1.3k
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
10.2 years ago
Cornwell, Adam
▴ 110
1
vote
0
replies
2.0k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR
readCtData
Heidi Dvinge
8.0 years ago
virginia.claudio
▴ 10
1
vote
5
replies
564
views
Manual creation of qPCRset does not work
bug
nondetects
HTqPCR
updated 5 months ago by
Nat.Nataren
• 0 • written 7 months ago by
Ed Siefker
▴ 230
1
vote
7
replies
1.7k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma
ndups
htqpcr
software error
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
julio.c.silver
• 0
1
vote
1
reply
1.3k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.2 years ago by
Gordon Smyth
50k • written 8.4 years ago by
sharvari gujja
▴ 40
1
vote
2
replies
1.2k
views
No differential expression with limmaCtData possible
limma
htqpcr
6.4 years ago
h.roest
• 0
0
votes
0
replies
1.6k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
11.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 14.2 years ago by
Naomi Altman
★ 6.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.4k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
a4
HTqPCR
a4
updated 14.2 years ago by
Heidi Dvinge
★ 2.0k • written 14.2 years ago by
marco fabbri
▴ 320
0
votes
0
replies
1.1k
views
qPCR plates containing multiple samples in HTqPCR
qPCR
HTqPCR
qPCR
HTqPCR
14.2 years ago
Heidi Dvinge
★ 2.0k
0
votes
4
replies
1.0k
views
HTqPCR and factorial design
qPCR
HTqPCR
qPCR
HTqPCR
updated 14.2 years ago by
Heidi Dvinge
★ 2.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.1k
views
HTqPCR useful for ChIP data ?
Preprocessing
Clustering
HTqPCR
Preprocessing
Clustering
HTqPCR
updated 17 months ago by
Javier
• 0 • written 12.3 years ago by
Guillaume Tiberi
▴ 10
0
votes
1
reply
1.0k
views
Post-hoc correction fro htQPCR
HTqPCR
HTqPCR
updated 13.3 years ago by
alessandro.guffanti@genomnia.com
▴ 330 • written 13.3 years ago by
Heidi Dvinge
★ 2.0k
0
votes
2
replies
2.0k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
HTqPCR
updated 14.3 years ago by
Heidi Dvinge
★ 2.0k • written 14.3 years ago by
Adam Kiezun
▴ 50
0
votes
1
reply
1.4k
views
TLDA data
Clustering
Cancer
PROcess
cycle
HTqPCR
Clustering
Cancer
PROcess
cycle
HTqPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
deepak roshan
▴ 40
0
votes
4
replies
1.5k
views
Reading in data with HTqPCR
qPCR
Cancer
cycle
HTqPCR
qPCR
Cancer
cycle
HTqPCR
13.9 years ago
Heidi Dvinge
★ 2.0k
0
votes
4
replies
2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.8 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
V. Oostra
▴ 30
0
votes
1
reply
1.8k
views
Problem with function limmaCtData in HTqPCR package: "leading minor of order 2 is not positive definite"
HTqPCR
HTqPCR
updated 13.8 years ago by
Heidi Dvinge
★ 2.0k • written 13.8 years ago by
Bass, Kevin
▴ 10
0
votes
0
replies
888
views
HTqPCR
HTqPCR
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.2k
views
HTqPCR problem
qPCR
GO
HTqPCR
qPCR
GO
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.5k
views
HTqPCR question
HTqPCR
HTqPCR
updated 13.4 years ago by
Heidi Dvinge
★ 2.0k • written 13.4 years ago by
Simon Melov
▴ 340
0
votes
0
replies
656
views
HTqPCR problem
Cancer
HTqPCR
Cancer
HTqPCR
13.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.5k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR)
qPCR
HTqPCR
qPCR
HTqPCR
13.3 years ago
Alexander Williams
▴ 20
0
votes
0
replies
1.8k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR) (Alexander Williams)
qPCR
HTqPCR
qPCR
HTqPCR
13.3 years ago
Alexander Williams
▴ 20
0
votes
0
replies
1.1k
views
HTqPCR package: plotCtDensity and modification in bandwith parameter
HTqPCR
HTqPCR
13.2 years ago
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
730
views
HTqPCR query
GO
HTqPCR
GO
HTqPCR
13.1 years ago
Heidi Dvinge
★ 2.0k
0
votes
3
replies
982
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 14.2 years ago by
Naomi Altman
★ 6.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
965
views
HTqPCR - TLDA analysis doubt
HTqPCR
HTqPCR
12.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.1k
views
HTqPCR: weird error and wrong feature positions after limma.CtData
HTqPCR
HTqPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.8k
views
Problems creating a qPCRset object in "HTqPCR"
HTqPCR
HTqPCR
12.8 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
703
views
colors in plotCtCategory heatmap
Category
HTqPCR
Category
HTqPCR
12.9 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
999
views
sir
Cancer
cycle
HTqPCR
Cancer
cycle
HTqPCR
updated 13.9 years ago by
deepak roshan
▴ 40 • written 13.9 years ago by
Heidi Dvinge
★ 2.0k
0
votes
1
reply
888
views
HTqPCR
HTqPCR
HTqPCR
updated 12.8 years ago by
Heidi Dvinge
★ 2.0k • written 12.8 years ago by
marco fabbri
▴ 320
0
votes
1
reply
1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA
microRNA
HTqPCR
miRNA
microRNA
HTqPCR
updated 12.7 years ago by
Heidi Dvinge
★ 2.0k • written 12.7 years ago by
Guido Hooiveld
★ 3.9k
0
votes
1
reply
1.1k
views
HTqPCR
qPCR
PROcess
HTqPCR
qPCR
PROcess
HTqPCR
12.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.1k
views
PCR efficiency correction with HTqPCR
qPCR
GO
Prostate
HTqPCR
qPCR
GO
Prostate
HTqPCR
updated 12.6 years ago by
Heidi Dvinge
★ 2.0k • written 12.6 years ago by
Max Mariasegaram
▴ 20
0
votes
0
replies
1.2k
views
doubt in HTqPCR
Cancer
ddCt
cycle
HTqPCR
ASSIGN
Cancer
ddCt
cycle
HTqPCR
ASSIGN
12.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
741
views
Binomial regression of HTqPCR data
Regression
HTqPCR
Regression
HTqPCR
12.5 years ago
Christopher Howerton
▴ 40
0
votes
1
reply
984
views
HTqPCR and Biobase's eSet
Biobase
HTqPCR
Biobase
HTqPCR
updated 12.4 years ago by
james perkins
▴ 300 • written 12.4 years ago by
Laurent Gautier
★ 2.3k
0
votes
0
replies
731
views
HTqPCR and Biobase's eSet
Biobase
nudge
HTqPCR
Biobase
nudge
HTqPCR
12.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
786
views
HTqPCR
HTqPCR
HTqPCR
12.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
884
views
HTqPCR useful for ChIP data ?
HTqPCR
HTqPCR
12.3 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.4k
views
HTqPCR problem with replicates
ddCt
HTqPCR
ddCt
HTqPCR
updated 12.2 years ago by
Heidi Dvinge
★ 2.0k • written 12.3 years ago by
marco fabbri
▴ 320
0
votes
0
replies
832
views
File formats for high throughput qPCR data
qPCR
HTqPCR
qPCR
HTqPCR
12.1 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.3k
views
HTqPCR
HTqPCR
HTqPCR
updated 12.0 years ago by
Heidi Dvinge
★ 2.0k • written 12.0 years ago by
wenhuo hu
▴ 200
0
votes
0
replies
805
views
HTqPCR normalization issues again
Normalization
HTqPCR
Normalization
HTqPCR
10.6 years ago
Guest User
★ 13k
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Hi Michael, thanks for the answer! I'll have a look : )
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It will likely not filter it out, but really the per-dataset details would affect the results.
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Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
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Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
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