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Comment: Result from GSEA for non-model organism not as expected
by
James W. MacDonald
64k
I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
by
James W. MacDonald
64k
This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…
Comment: Subtracting INPUT reads from ChIP read counts.
by
ann-sophie.gironne
• 0
Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…
Comment: Ensembl down???
by
James W. MacDonald
64k
Yup, they seem to be down. What exactly are you trying to do? There may be other options.
Answer: Result from GSEA for non-model organism not as expected
by
Aastha Kapoor
• 0
I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
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Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
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