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Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★
1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset.
The ~Genotype +…
Answer: Remove duplicates of colData in TreeSummarizedExperiment
by
Michael Love
40k
Copying my code from Slack for posterity. James' code is more streamlined for this step I think.
```
# make a dataset that has duplicate s…
Comment: DataFrame Construction With Non-standard Column
by
James W. MacDonald
63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Comment: DeSeq2 design fails (full model matrix is less than full rank)
by
Basti
▴
720
As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…
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