Bioconductor IlluminaHumanMethylationEPICmanifest

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 24 months ago by James W. MacDonald 68k • written 24 months ago by rae.alshammari ▴ 20

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IlluminaHumanMethylationEPICmanifest ChAMP annotation

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Matilda • 0

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ENmix IlluminaHumanMethylationEPICmanifest

updated 21 months ago by James W. MacDonald 68k • written 3.8 years ago by Daphna • 0

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Illumina minfi IlluminaHumanMethylationEPICmanifest

3.8 years ago octaviompa • 0

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IlluminaHumanMethylationEPICmanifest minfi conumee

updated 4.8 years ago by volker hovestadt ▴ 40 • written 4.9 years ago by theresa.walder • 0

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IlluminaHumanMethylationEPICmanifest

updated 4.0 years ago by Di • 0 • written 4.9 years ago by poojitha.stemcell ▴ 10

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 8.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.1 years ago by Giovanni Calice ▴ 160

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illuminahumanmethylationepicanno.ilmn10b.hg19 illuminahumanmethylationepicmanifest minfi limma 850k

8.9 years ago ceciliebucher • 0

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minfi methylation illuminahumanmethylationepicmanifest illumina

9.9 years ago rasii • 0

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minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19

updated 9.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.9 years ago by igor ▴ 50

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760