Showing : IlluminaHumanMethylationEPICmanifest • reset
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minfi MethylationEPIC errors
minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19
updated 9.1 years ago by ★ 6.5k • written 9.1 years ago by ▴ 50
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Installing MethylationEPIC minifest and annotation
minfi methylation illuminahumanmethylationepicmanifest illumina
9.1 years ago rasii • 0
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How to pick Illumina EPIC Array probe IDs within a specific genomic region?
IlluminaHumanMethylationEPICmanifest
updated 3.2 years ago by • 0 • written 4.1 years ago by ▴ 10
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Help with ENmix readidat
ENmix IlluminaHumanMethylationEPICmanifest
updated 11 months ago by 68k • written 3.0 years ago by • 0
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conumee (for EPIC): query intensities not given for all probes
IlluminaHumanMethylationEPICmanifest minfi conumee
updated 4.0 years ago by ▴ 40 • written 4.1 years ago by • 0
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Annotation Illumina Infinium Mouse Methylation
Illumina minfi IlluminaHumanMethylationEPICmanifest
3.0 years ago octaviompa • 0
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Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest
updated 14 months ago by 68k • written 14 months ago by ▴ 20
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How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 23 months ago by 68k • written 23 months ago by • 0
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minfi MethylationEPIC errors
illuminahumanmethylationepicanno.ilmn10b.hg19 illuminahumanmethylationepicmanifest minfi limma 850k
8.1 years ago ceciliebucher • 0
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IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio illuminahumanmethylationepicmanifest minfi
updated 7.3 years ago by ★ 6.5k • written 7.3 years ago by ▴ 160
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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