Showing : Install • reset
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
8 hours ago • updated 3 hours ago BioinfGuru ▴ 30
0
votes
2
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728
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error in install immunedeconv
Install
updated 15 days ago by • 0 • written 13 months ago by • 0
1
vote
3
replies
6.5k
views
problem in installing Bio conductor package
bioconductorpackages Install
updated 8 weeks ago by • 0 • written 3.4 years ago by • 0
0
votes
4
replies
299
views
DNABarcodes-Installation Issue
DNABarcodes Install
11 weeks ago nk130 • 0
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
0
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0
replies
431
views
Version map cannot be validated - not mapping to new bioconductor website
Install
5 months ago Alexander • 0
2
votes
5
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880
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 5 months ago by 41k • written 5 months ago by • 0
0
votes
7
replies
1.5k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 5 months ago by 65k • written 5 months ago by • 0
3
votes
5
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1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
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1
reply
583
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
0
votes
2
replies
570
views
msa Installation failed - please help
Install msa
11 months ago Ido • 0
1
vote
4
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6.0k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 11 months ago by • 0 • written 2.2 years ago by • 0
0
votes
1
reply
3.2k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 12 months ago by ★ 4.0k • written 12 months ago by • 0
1
vote
2
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825
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
14 months ago abhisek001 • 0
1
vote
3
replies
5.3k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 15 months ago by 3.8k • written 17 months ago by • 0
1
vote
1
reply
2.0k
views
packages not installing from sources the package which needs compilation
Install
updated 16 months ago by 65k • written 16 months ago by • 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 16 months ago by • 0
1
vote
7
replies
1.4k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 16 months ago by 3.8k • written 16 months ago by • 0
0
votes
2
replies
1.6k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 18 months ago by ★ 4.0k • written 18 months ago by • 0
1
vote
20
replies
3.5k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 18 months ago by 65k • written 18 months ago by • 0
1
vote
3
replies
1.0k
views
I can't upgrade to version 3.15 in R
Install
updated 18 months ago by 50k • written 18 months ago by • 0
1
vote
1
reply
566
views
Downloading DESeq package manually
DESeq2 Install
updated 18 months ago by ▴ 770 • written 18 months ago by • 0
1
vote
1
reply
848
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 19 months ago by 3.8k • written 19 months ago by • 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 22 months ago by • 0
2
votes
2
replies
966
views
rtracklayer S.h
install
23 months ago gibran • 0
0
votes
1
reply
1.2k
views
trouble installing DESeq2
install packages R DESeq2
updated 23 months ago by 3.8k • written 23 months ago by • 0
0
votes
2
replies
2.7k
views
non-zero exit status when trying to install a package
Install
23 months ago BioC123 • 0
1
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3
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1.2k
views
Bioconductor installation error
Install
updated 24 months ago by • 0 • written 24 months ago by ▴ 10
0
votes
2
replies
1.3k
views
Installation problems
Install
updated 24 months ago by 3.8k • written 24 months ago by • 0
0
votes
2
replies
913
views
Forking a package/install from source
install package fork bugfix
updated 2.0 years ago by 65k • written 2.0 years ago by • 0
0
votes
2
replies
1.9k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 2.1 years ago by 3.8k • written 2.1 years ago by ▴ 30
2
votes
1
reply
3.7k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago Theresa ▴ 20
1
vote
2
replies
804
views
How to install R package from GitHub
Install github
updated 2.1 years ago by 3.8k • written 2.1 years ago by • 0
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
3
votes
5
replies
10k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
2.2 years ago czan ▴ 10
0
votes
3
replies
1.8k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
4
votes
2
replies
4.0k
views
Install package without updating dependent package
Install AnnotationForge
2.4 years ago 亮 • 0
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.4 years ago RobKo ▴ 10
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.5 years ago by ▴ 10 • written 2.5 years ago by • 0
0
votes
2
replies
1.4k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
2.5 years ago ladypurrsia ▴ 10
2
votes
4
replies
2.6k
views
BiocManager::install() does not work anymore
Install PackageType
updated 2.5 years ago by 3.8k • written 2.5 years ago by • 0
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 2.7 years ago by 6.7k • written 2.7 years ago by • 0
0
votes
1
reply
989
views
install GenomicFeatures fail
GenomicFeatures install
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 80
1
vote
1
reply
947
views
simplifyEnrichment install error
package Rversion Install simplifyEnrichment
updated 3.0 years ago by 3.8k • written 3.0 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
1
vote
4
replies
1.5k
views
Failing to install DEP package. Some strange error.
R Bioconductor Install DEP
3.1 years ago tpm • 0
2
votes
1
reply
824
views
Problem with pd.hta.2.0 package installation
Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
votes
1
reply
879
views
error during installation of 'DEseq2' package
DESeq2 Install
updated 3.1 years ago by 16k • written 3.2 years ago by • 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
50 results • Page 1 of 1
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Replies
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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