Bioconductor Install

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bioconductor Install

6 hours ago • updated 1 hour ago BioinfGuru ▴ 30

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Install

updated 15 days ago by Arash • 0 • written 13 months ago by fenglingao • 0

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DNABarcodes Install

11 weeks ago nk130 • 0

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Bioconductor Install affy

updated 5 months ago by ATpoint ★ 4.0k • written 16 months ago by laujihen • 0

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Install

5 months ago Alexander • 0

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DESeq2 SummarizedExperiment SparseArray Install DelayedArray

updated 5 months ago by Michael Love 41k • written 5 months ago by eg226 • 0

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Install instal

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by client.kashi • 0

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Bioconductor Install

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Bioconductor Install library biocmanager

updated 9 months ago by Vincent J. Carey, Jr. 6.7k • written 9 months ago by Ndimensional ▴ 20

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Install msa

11 months ago Ido • 0

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Install impute

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Bioconductor Install

updated 12 months ago by ATpoint ★ 4.0k • written 12 months ago by 3305504122 • 0

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Bioconductor Install DESeq2

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bioconductorpackages Install

updated 8 weeks ago by Guru • 0 • written 3.4 years ago by k200987 • 0

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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