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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
6 days ago BioinfGuru ▴ 30
0
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4
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310
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DNABarcodes-Installation Issue
DNABarcodes Install
12 weeks ago • updated 11 weeks ago nk130 • 0
0
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0
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442
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Version map cannot be validated - not mapping to new bioconductor website
Install
5 months ago Alexander • 0
2
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5
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901
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SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 5 months ago by 41k • written 5 months ago by • 0
0
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7
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1.5k
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Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 5 months ago by 65k • written 5 months ago by • 0
0
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1
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594
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bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
3
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5
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1.1k
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why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
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2
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575
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msa Installation failed - please help
Install msa
11 months ago Ido • 0
0
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2
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739
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error in install immunedeconv
Install
updated 21 days ago by • 0 • written 13 months ago by • 0
0
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6
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2.1k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
1
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4
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6.1k
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Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 12 months ago by • 0 • written 2.2 years ago by • 0
5
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18
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7.4k
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Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
1
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3
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6.5k
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problem in installing Bio conductor package
bioconductorpackages Install
updated 8 weeks ago by • 0 • written 3.4 years ago by • 0
13 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
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Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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