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Install
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Tutorial:
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
bioconductor
Install
2 hours ago
BioinfGuru
▴ 30
0
votes
2
replies
728
views
error in install immunedeconv
Install
updated 15 days ago by
Arash
• 0 • written 13 months ago by
fenglingao
• 0
1
vote
3
replies
6.5k
views
problem in installing Bio conductor package
bioconductorpackages
Install
updated 8 weeks ago by
Guru
• 0 • written 3.4 years ago by
k200987
• 0
0
votes
4
replies
299
views
DNABarcodes-Installation Issue
DNABarcodes
Install
11 weeks ago
nk130
• 0
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 4 months ago by
picasa1983
• 0 • written 2.2 years ago by
Victor
• 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 5 months ago by
ATpoint
★ 4.0k • written 16 months ago by
laujihen
• 0
0
votes
0
replies
430
views
Version map cannot be validated - not mapping to new bioconductor website
Install
5 months ago
Alexander
• 0
2
votes
5
replies
879
views
SparseArray unable to install on Bioc 3.18
DESeq2
SummarizedExperiment
SparseArray
Install
DelayedArray
updated 5 months ago by
Michael Love
41k • written 5 months ago by
eg226
• 0
0
votes
7
replies
1.5k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install
instal
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
client.kashi
• 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 9 months ago by
Vincent J. Carey, Jr.
6.7k • written 9 months ago by
Ndimensional
▴ 20
0
votes
1
reply
583
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 9 months ago by
Mike Smith
★ 6.5k • written 9 months ago by
Catia
• 0
0
votes
2
replies
570
views
msa Installation failed - please help
Install
msa
11 months ago
Ido
• 0
1
vote
4
replies
6.0k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install
impute
updated 11 months ago by
yuzhijian
• 0 • written 2.2 years ago by
Aaron
• 0
0
votes
1
reply
3.2k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor
Install
updated 12 months ago by
ATpoint
★ 4.0k • written 12 months ago by
3305504122
• 0
14 results • Page
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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Answer: Error retrieving ensembl gene id using biomaRt...
by
Mike Smith
★ 6.5k
I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`
Answer: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…
Comment: DESeq2 setting significant p-value
by
Michael Love
41k
``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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