Showing : Install • reset
0
votes
6
replies
1.6k
views
Illumina Methylation Manifest Install
Install biocinstaller package installation
6.0 years ago julieumn • 0
0
votes
7
replies
1.5k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 5 months ago by 65k • written 5 months ago by • 0
1
vote
4
replies
6.1k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 12 months ago by • 0 • written 2.2 years ago by • 0
3
votes
2
replies
5.6k
views
problem installing "vsn" on debian... gcc: error: unrecognized command line option -fstack-protector-strong
install vsn gcc debian
9.2 years ago regcl • 0
1
vote
5
replies
3.6k
views
Can't Download DESeq2 Package (Ubuntu 20.04; R 4.0.1; BioConductor 3.11)
deseq2 install r4.0 bioconductor3.11 ubuntu20.04
3.9 years ago ruwaa.ibrahem • 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
0
votes
2
replies
1.3k
views
Installation problems
Install
updated 24 months ago by 3.8k • written 24 months ago by • 0
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite install
8.4 years ago louiseapps2 • 0
3
votes
5
replies
10k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
2.2 years ago czan ▴ 10
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.5 years ago by ▴ 10 • written 2.5 years ago by • 0
2
votes
2
replies
1.4k
views
BiomaRT URLs down? 404 Not Found
biomart bioconductor support.bioconductor.org biocinstaller install
6.3 years ago n.pantelireis16 • 0
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.4 years ago RobKo ▴ 10
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
8
votes
7
replies
1.8k
views
RMySQL availiability with Bioconductor 3.0
Install RMySQL Windows
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 30
1
vote
3
replies
6.5k
views
problem in installing Bio conductor package
bioconductorpackages Install
updated 8 weeks ago by • 0 • written 3.4 years ago by • 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor docker Install
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
votes
1
reply
881
views
error during installation of 'DEseq2' package
DESeq2 Install
updated 3.1 years ago by 16k • written 3.2 years ago by • 0
2
votes
1
reply
828
views
Problem with pd.hta.2.0 package installation
Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
1
vote
20
replies
3.5k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 18 months ago by 65k • written 18 months ago by • 0
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 2.7 years ago by 6.7k • written 2.7 years ago by • 0
0
votes
2
replies
1.4k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
2.5 years ago ladypurrsia ▴ 10
0
votes
4
replies
310
views
DNABarcodes-Installation Issue
DNABarcodes Install
12 weeks ago • updated 11 weeks ago nk130 • 0
1
vote
2
replies
2.0k
views
Installation of "xps" on windows 7 : error message
xps windows 7 Install
updated 9.6 years ago by ★ 3.9k • written 9.6 years ago by • 0
0
votes
1
reply
2.1k
views
Compilation problem installing IRanges
Iranges install
updated 8.9 years ago by 16k • written 9.0 years ago by • 0
0
votes
5
replies
2.0k
views
Flowclust install probelms on Ubuntu
flowclust ubuntu install error
8.9 years ago gareth.howell • 0
1
vote
1
reply
5.0k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install installation biocinstaller
8.8 years ago tresch • 0
1
vote
1
reply
2.7k
views
installing GO.db on windows 64x
go install
updated 8.6 years ago by 65k • written 8.6 years ago by • 0
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 20
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 40
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 10
0
votes
2
replies
970
views
Error when installing pcaExplorer
install GenomeInfoDbData
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
3.8 years ago mja18 ▴ 40
7
votes
2
replies
4.4k
views
Help in installing certain pacakges
software error install
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 40
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 3.4 years ago by ▴ 750 • written 3.4 years ago by • 0
0
votes
1
reply
1000
views
install GenomicFeatures fail
GenomicFeatures install
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 80
4
votes
2
replies
4.1k
views
Install package without updating dependent package
Install AnnotationForge
2.4 years ago 亮 • 0
1
vote
1
reply
953
views
simplifyEnrichment install error
package Rversion Install simplifyEnrichment
updated 3.0 years ago by 3.8k • written 3.0 years ago by ▴ 10
1
vote
3
replies
1.0k
views
I can't upgrade to version 3.15 in R
Install
updated 18 months ago by 50k • written 18 months ago by • 0
1
vote
3
replies
1.2k
views
Bioconductor installation error
Install
updated 24 months ago by • 0 • written 24 months ago by ▴ 10
0
votes
3
replies
1.8k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 23 months ago by • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
0
votes
2
replies
739
views
error in install immunedeconv
Install
updated 21 days ago by • 0 • written 13 months ago by • 0
0
votes
2
replies
1.6k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 18 months ago by ★ 4.0k • written 18 months ago by • 0
1
vote
2
replies
830
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
14 months ago abhisek001 • 0
2
votes
1
reply
3.8k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago Theresa ▴ 20
0
votes
1
reply
1.2k
views
trouble installing DESeq2
install packages R DESeq2
updated 23 months ago by 3.8k • written 23 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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