Showing : Install • reset
0
votes
4
replies
297
views
DNABarcodes-Installation Issue
DNABarcodes Install
11 weeks ago nk130 • 0
0
votes
0
replies
430
views
Version map cannot be validated - not mapping to new bioconductor website
Install
5 months ago Alexander • 0
2
votes
5
replies
879
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 5 months ago by 41k • written 5 months ago by • 0
0
votes
7
replies
1.5k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
1
reply
582
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
votes
2
replies
570
views
msa Installation failed - please help
Install msa
11 months ago Ido • 0
0
votes
1
reply
3.2k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 12 months ago by ★ 4.0k • written 12 months ago by • 0
0
votes
2
replies
728
views
error in install immunedeconv
Install
updated 15 days ago by • 0 • written 13 months ago by • 0
1
vote
2
replies
825
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
14 months ago abhisek001 • 0
1
vote
1
reply
2.0k
views
packages not installing from sources the package which needs compilation
Install
updated 16 months ago by 65k • written 16 months ago by • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
1
vote
7
replies
1.4k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 16 months ago by 3.8k • written 16 months ago by • 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 16 months ago by • 0
1
vote
3
replies
5.3k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 15 months ago by 3.8k • written 17 months ago by • 0
0
votes
2
replies
1.6k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 18 months ago by ★ 4.0k • written 18 months ago by • 0
1
vote
20
replies
3.5k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 18 months ago by 65k • written 18 months ago by • 0
1
vote
3
replies
1.0k
views
I can't upgrade to version 3.15 in R
Install
updated 18 months ago by 50k • written 18 months ago by • 0
1
vote
1
reply
566
views
Downloading DESeq package manually
DESeq2 Install
updated 18 months ago by ▴ 770 • written 18 months ago by • 0
1
vote
1
reply
848
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 19 months ago by 3.8k • written 19 months ago by • 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 22 months ago by • 0
2
votes
2
replies
966
views
rtracklayer S.h
install
23 months ago gibran • 0
0
votes
1
reply
1.2k
views
trouble installing DESeq2
install packages R DESeq2
updated 23 months ago by 3.8k • written 23 months ago by • 0
0
votes
2
replies
2.7k
views
non-zero exit status when trying to install a package
Install
23 months ago BioC123 • 0
1
vote
3
replies
1.2k
views
Bioconductor installation error
Install
updated 24 months ago by • 0 • written 24 months ago by ▴ 10
0
votes
2
replies
1.3k
views
Installation problems
Install
updated 24 months ago by 3.8k • written 24 months ago by • 0
0
votes
2
replies
913
views
Forking a package/install from source
install package fork bugfix
updated 2.0 years ago by 65k • written 2.0 years ago by • 0
0
votes
2
replies
1.9k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 2.1 years ago by 3.8k • written 2.1 years ago by ▴ 30
2
votes
1
reply
3.7k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago Theresa ▴ 20
1
vote
2
replies
803
views
How to install R package from GitHub
Install github
updated 2.1 years ago by 3.8k • written 2.1 years ago by • 0
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
3
votes
5
replies
10k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
2.2 years ago • updated 2.1 years ago czan ▴ 10
1
vote
4
replies
6.0k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 11 months ago by • 0 • written 2.2 years ago by • 0
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
0
votes
3
replies
1.8k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
4
votes
2
replies
4.0k
views
Install package without updating dependent package
Install AnnotationForge
2.4 years ago 亮 • 0
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.4 years ago RobKo ▴ 10
0
votes
2
replies
1.4k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
2.5 years ago ladypurrsia ▴ 10
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.5 years ago by ▴ 10 • written 2.5 years ago by • 0
2
votes
4
replies
2.6k
views
BiocManager::install() does not work anymore
Install PackageType
updated 2.5 years ago by 3.8k • written 2.5 years ago by • 0
0
votes
1
reply
989
views
install GenomicFeatures fail
GenomicFeatures install
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 80
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 2.6 years ago by 6.7k • written 2.7 years ago by • 0
1
vote
1
reply
947
views
simplifyEnrichment install error
package Rversion Install simplifyEnrichment
updated 3.0 years ago by 3.8k • written 3.0 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
1
vote
4
replies
1.5k
views
Failing to install DEP package. Some strange error.
R Bioconductor Install DEP
3.1 years ago tpm • 0
2
votes
1
reply
824
views
Problem with pd.hta.2.0 package installation
Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
votes
1
reply
879
views
error during installation of 'DEseq2' package
DESeq2 Install
updated 3.1 years ago by 16k • written 3.2 years ago by • 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install GO.db
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor docker Install
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
50 results • Page 1 of 1
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Comment: Finding DEGs by using edgeR by Gordon Smyth 50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR by prity6459 • 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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