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Install
•
reset
1
vote
3
replies
6.3k
views
problem in installing Bio conductor package
bioconductorpackages
Install
updated 5 weeks ago by
Guru
• 0 • written 3.4 years ago by
k200987
• 0
0
votes
4
replies
239
views
DNABarcodes-Installation Issue
DNABarcodes
Install
8 weeks ago
nk130
• 0
5
votes
18
replies
7.3k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 3 months ago by
picasa1983
• 0 • written 2.2 years ago by
Victor
• 0
0
votes
6
replies
2.0k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 4 months ago by
ATpoint
★ 4.0k • written 16 months ago by
laujihen
• 0
0
votes
0
replies
397
views
Version map cannot be validated - not mapping to new bioconductor website
Install
4 months ago
Alexander
• 0
2
votes
5
replies
814
views
SparseArray unable to install on Bioc 3.18
DESeq2
SummarizedExperiment
SparseArray
Install
DelayedArray
updated 4 months ago by
Michael Love
41k • written 4 months ago by
eg226
• 0
0
votes
7
replies
1.3k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install
instal
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
client.kashi
• 0
3
votes
5
replies
1.0k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
0
votes
1
reply
550
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 8 months ago by
Mike Smith
★ 6.5k • written 8 months ago by
Catia
• 0
0
votes
2
replies
536
views
msa Installation failed - please help
Install
msa
10 months ago
Ido
• 0
1
vote
4
replies
5.9k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install
impute
updated 11 months ago by
yuzhijian
• 0 • written 2.1 years ago by
Aaron
• 0
0
votes
1
reply
3.0k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor
Install
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
3305504122
• 0
0
votes
1
reply
631
views
error in install immunedeconv
Install
updated 12 months ago by
Lluís Revilla Sancho
▴ 730 • written 12 months ago by
fenglingao
• 0
1
vote
2
replies
795
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
13 months ago
abhisek001
• 0
1
vote
3
replies
5.2k
views
Not able to install packages in Bioconductor version '3.16'
Install
BiocManager
version3.16
updated 14 months ago by
shepherl
3.8k • written 16 months ago by
Tonmoya
• 0
1
vote
1
reply
2.0k
views
packages not installing from sources the package which needs compilation
Install
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
무선
• 0
2
votes
4
replies
2.0k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 16 months ago by
abhisek001
• 0
1
vote
7
replies
1.3k
views
query regarding error in installation of "goseq" R bioconductor package
R
Bioconductor
Install
updated 16 months ago by
shepherl
3.8k • written 16 months ago by
abhisek001
• 0
0
votes
2
replies
1.6k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2
Install
r
updated 17 months ago by
ATpoint
★ 4.0k • written 17 months ago by
Catherine
• 0
1
vote
20
replies
3.4k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2
Install
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Hannah000111
• 0
1
vote
3
replies
982
views
I can't upgrade to version 3.15 in R
Install
updated 17 months ago by
Gordon Smyth
50k • written 18 months ago by
dsrlij
• 0
1
vote
1
reply
553
views
Downloading DESeq package manually
DESeq2
Install
updated 18 months ago by
Basti
▴ 750 • written 18 months ago by
JAcky
• 0
1
vote
1
reply
825
views
Unable to install "scruff" with BiocManager::install()
scruff
Install
ShortRead
updated 19 months ago by
shepherl
3.8k • written 19 months ago by
Jackson
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 22 months ago by
Hervé Pagès
16k • written 22 months ago by
Michel
• 0
2
votes
2
replies
936
views
rtracklayer S.h
install
22 months ago
gibran
• 0
0
votes
1
reply
1.1k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 22 months ago by
shepherl
3.8k • written 22 months ago by
eruan1
• 0
0
votes
2
replies
2.6k
views
non-zero exit status when trying to install a package
Install
23 months ago • updated 22 months ago
BioC123
• 0
1
vote
3
replies
1.2k
views
Bioconductor installation error
Install
updated 23 months ago by
Helena
• 0 • written 23 months ago by
Cody
▴ 10
0
votes
2
replies
1.3k
views
Installation problems
Install
updated 23 months ago by
shepherl
3.8k • written 23 months ago by
laiajulianamu
• 0
0
votes
2
replies
888
views
Forking a package/install from source
install
package
fork
bugfix
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
Jeff
• 0
0
votes
2
replies
1.8k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 2.0 years ago by
shepherl
3.8k • written 2.0 years ago by
nhaus
▴ 10
2
votes
1
reply
3.7k
views
Bioconductor Package Installation
install
TxDb.Hsapiens.UCSC.hg38.knownGene
2.0 years ago
Theresa
▴ 20
1
vote
2
replies
783
views
How to install R package from GitHub
Install
github
updated 2.1 years ago by
shepherl
3.8k • written 2.1 years ago by
Padam
• 0
0
votes
3
replies
1.2k
views
Warning messages during intallation of XCMS
xcms
Install
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
Fanny-shufan
• 0
3
votes
5
replies
9.8k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter
Install
2.1 years ago
czan
▴ 10
0
votes
3
replies
1.8k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install
gpart
renv
updated 2.1 years ago by
Bert
• 0 • written 2.2 years ago by
matt.shenton
• 0
4
votes
2
replies
4.0k
views
Install package without updating dependent package
Install
AnnotationForge
2.3 years ago
亮
• 0
5
votes
4
replies
2.5k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago • updated 2.3 years ago
RobKo
▴ 10
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install
3.13
affyQCReport
updated 2.4 years ago by
Miguel
▴ 10 • written 2.5 years ago by
lsmatott
• 0
0
votes
2
replies
1.3k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install
Bioconductor
DESeq2
2.5 years ago • updated 2.4 years ago
ladypurrsia
▴ 10
2
votes
4
replies
2.6k
views
BiocManager::install() does not work anymore
Install
PackageType
updated 2.5 years ago by
shepherl
3.8k • written 2.5 years ago by
Julie
• 0
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install
VariantAnnotation
Bioconductor
chromVAR
updated 2.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.6 years ago by
Hannah
• 0
0
votes
1
reply
970
views
install GenomicFeatures fail
GenomicFeatures
install
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
soda
▴ 80
1
vote
1
reply
930
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 3.0 years ago by
shepherl
3.8k • written 3.0 years ago by
ch_el
▴ 10
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error
DESeq2
Install
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Mick
• 0
1
vote
4
replies
1.5k
views
Failing to install DEP package. Some strange error.
R
Bioconductor
Install
DEP
3.1 years ago
tpm
• 0
2
votes
1
reply
801
views
Problem with pd.hta.2.0 package installation
Install
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
croft.carys
• 0
0
votes
1
reply
865
views
error during installation of 'DEseq2' package
DESeq2
Install
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
su
• 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager
Install
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
saadmurtazakhan
▴ 10
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install
GO.db
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
Enrico
• 0
50 results • Page
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Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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