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Install
•
reset
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite
install
8.4 years ago
louiseapps2
• 0
3
votes
5
replies
10k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter
Install
2.2 years ago
czan
▴ 10
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 4 months ago by
picasa1983
• 0 • written 2.2 years ago by
Victor
• 0
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
dnajuice
▴ 20
1
vote
3
replies
6.5k
views
problem in installing Bio conductor package
bioconductorpackages
Install
updated 8 weeks ago by
Guru
• 0 • written 3.4 years ago by
k200987
• 0
1
vote
4
replies
6.1k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install
impute
updated 11 months ago by
yuzhijian
• 0 • written 2.2 years ago by
Aaron
• 0
3
votes
2
replies
5.6k
views
problem installing "vsn" on debian... gcc: error: unrecognized command line option -fstack-protector-strong
install
vsn
gcc
debian
9.2 years ago
regcl
• 0
1
vote
3
replies
5.3k
views
Not able to install packages in Bioconductor version '3.16'
Install
BiocManager
version3.16
updated 15 months ago by
shepherl
3.8k • written 17 months ago by
Tonmoya
• 0
1
vote
1
reply
5.0k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install
installation
biocinstaller
8.8 years ago
tresch
• 0
7
votes
2
replies
4.4k
views
Help in installing certain pacakges
software error
install
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
lirongrossmann
▴ 40
4
votes
2
replies
4.0k
views
Install package without updating dependent package
Install
AnnotationForge
2.4 years ago
亮
• 0
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
jol.espinoz
▴ 40
2
votes
1
reply
3.7k
views
Bioconductor Package Installation
install
TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago
Theresa
▴ 20
1
vote
5
replies
3.6k
views
Can't Download DESeq2 Package (Ubuntu 20.04; R 4.0.1; BioConductor 3.11)
deseq2
install
r4.0
bioconductor3.11
ubuntu20.04
3.9 years ago
ruwaa.ibrahem
• 0
1
vote
20
replies
3.5k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2
Install
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Hannah000111
• 0
0
votes
1
reply
3.3k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor
Install
updated 12 months ago by
ATpoint
★ 4.0k • written 12 months ago by
3305504122
• 0
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor
error
biocinstaller
package installation
install
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
matt.s.leslie
• 0
1
vote
1
reply
2.7k
views
installing GO.db on windows 64x
go
install
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
nikka1691
• 0
0
votes
2
replies
2.7k
views
non-zero exit status when trying to install a package
Install
23 months ago
BioC123
• 0
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago
RobKo
▴ 10
2
votes
4
replies
2.6k
views
BiocManager::install() does not work anymore
Install
PackageType
updated 2.5 years ago by
shepherl
3.8k • written 2.5 years ago by
Julie
• 0
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite
gcc
install
fedora
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Knut Hansen
▴ 20
0
votes
1
reply
2.3k
views
"Error in readRDS" while trying to install XML package
xml
install
8.7 years ago
jason.harris
• 0
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
443606623
• 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 5 months ago by
ATpoint
★ 4.0k • written 16 months ago by
laujihen
• 0
0
votes
1
reply
2.1k
views
Compilation problem installing IRanges
Iranges
install
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
tuto345
• 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager
Install
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
saadmurtazakhan
▴ 10
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 17 months ago by
abhisek001
• 0
1
vote
1
reply
2.1k
views
packages not installing from sources the package which needs compilation
Install
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
무선
• 0
0
votes
5
replies
2.0k
views
Error installing VariantAnnotation with bioconductor/devel_core
install
variantannotation
9.1 years ago
kforner
• 0
1
vote
2
replies
2.0k
views
Installation of "xps" on windows 7 : error message
xps
windows 7
Install
updated 9.6 years ago by
cstrato
★ 3.9k • written 9.6 years ago by
Alexandre Henriques
• 0
0
votes
5
replies
2.0k
views
Flowclust install probelms on Ubuntu
flowclust
ubuntu
install
error
8.9 years ago
gareth.howell
• 0
0
votes
2
replies
1.9k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 2.1 years ago by
shepherl
3.8k • written 2.1 years ago by
nhaus
▴ 30
0
votes
3
replies
1.8k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install
gpart
renv
updated 2.2 years ago by
Bert
• 0 • written 2.2 years ago by
matt.shenton
• 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Khai-Chuong
• 0
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install
CAMERA
insta
PackageType
updated 3.4 years ago by
Andrzej Oleś
▴ 750 • written 3.4 years ago by
Christopher
• 0
8
votes
7
replies
1.8k
views
RMySQL availiability with Bioconductor 3.0
Install
RMySQL
Windows
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
Panagiotis Moulos
▴ 30
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install
3.13
affyQCReport
updated 2.5 years ago by
Miguel
▴ 10 • written 2.5 years ago by
lsmatott
• 0
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite
package installation
installation
install
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
cristian
▴ 10
0
votes
6
replies
1.6k
views
Illumina Methylation Manifest Install
Install
biocinstaller
package installation
6.0 years ago
julieumn
• 0
0
votes
2
replies
1.6k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2
Install
r
updated 18 months ago by
ATpoint
★ 4.0k • written 18 months ago by
Catherine
• 0
1
vote
4
replies
1.5k
views
Failing to install DEP package. Some strange error.
R
Bioconductor
Install
DEP
3.1 years ago
tpm
• 0
0
votes
7
replies
1.5k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install
instal
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
client.kashi
• 0
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.4 years ago
Hector
• 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2
install
software error
3.8 years ago
mja18
▴ 40
1
vote
7
replies
1.4k
views
query regarding error in installation of "goseq" R bioconductor package
R
Bioconductor
Install
updated 17 months ago by
shepherl
3.8k • written 17 months ago by
abhisek001
• 0
0
votes
2
replies
1.4k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install
Bioconductor
DESeq2
2.5 years ago
ladypurrsia
▴ 10
2
votes
2
replies
1.4k
views
BiomaRT URLs down? 404 Not Found
biomart
bioconductor
support.bioconductor.org
biocinstaller
install
6.3 years ago • updated 6.2 years ago
n.pantelireis16
• 0
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install
GO.db
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Enrico
• 0
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install
VariantAnnotation
Bioconductor
chromVAR
updated 2.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.7 years ago by
Hannah
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve gene ontology GO class?
by
bandconductor
• 0
Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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