Bioconductor InteractionSet

Showing : InteractionSet • reset

votes

replies

644

views

InteractionSet GInteractions

3 months ago Sarah ▴ 10

vote

replies

1.3k

views

diffhic interactionset

7.7 years ago Vivek.b ▴ 100

votes

1.2k

views

diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

votes

1.3k

views

interactionset granges

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.2k

views

genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

votes

823

views

diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

votes

830

views

S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

votes

replies

993

views

InteractionSet

2.8 years ago noag • 0

vote

replies

1.0k

views

DEGcomparison DESeq2 InteractionSet pvalue

9 weeks ago • updated 8 weeks ago paria.alipour • 0

votes

1.0k

views

InteractionSet structural variants

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by tangming2005 ▴ 190

votes

replies

755

views

InteractionSet BuildReport

15 months ago martin.grigorov ▴ 10

vote

replies

397

views

InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

12 results • Page 1 of 1

Recent ...

Replies

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0