Bioconductor InteractionSet

Showing : InteractionSet • reset

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DEGcomparison DESeq2 InteractionSet pvalue

8 weeks ago • updated 7 weeks ago paria.alipour • 0

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633

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InteractionSet GInteractions

3 months ago Sarah ▴ 10

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386

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InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

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745

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InteractionSet BuildReport

15 months ago • updated 14 months ago martin.grigorov ▴ 10

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977

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InteractionSet

2.8 years ago noag • 0

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823

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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817

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.3k

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interactionset granges

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.3k

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diffhic interactionset

7.7 years ago Vivek.b ▴ 100

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1.0k

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InteractionSet structural variants

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by tangming2005 ▴ 190

12 results • Page 1 of 1

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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

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Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k