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Isoform
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354
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IsoformSwitchAnalyzer
Isoform
IsoformSwitchAnalyzeR
10 months ago
Craig
• 0
0
votes
2
replies
541
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 16 months ago by
lhaiyan3
• 0
0
votes
5
replies
2.1k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData
isoform
DESeq2
23 months ago • updated 22 months ago
priyanka.m
• 0
0
votes
0
replies
1.3k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
3.5 years ago
ra711
• 0
0
votes
5
replies
1.2k
views
isoform data, deep sequencing and voom
isoform
deep sequencing
voom
updated 3.6 years ago by
Gordon Smyth
50k • written 3.6 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.0k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport
isoform
voom
updated 3.7 years ago by
Gordon Smyth
50k • written 3.7 years ago by
Ina Hoeschele
▴ 620
1
vote
4
replies
1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 4.5 years ago by
k.vitting.seerup
▴ 120 • written 4.5 years ago by
asmita
• 0
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 4.6 years ago by
swbarnes2
★ 1.3k • written 4.6 years ago by
angel.campos
• 0
1
vote
5
replies
1.1k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 5.3 years ago by
A
▴ 40
0
votes
0
replies
917
views
IsoformSwitchAnalyzeR error input
kallisto
differential isoform usage
isoform
6.4 years ago
ilyco
• 0
10 results • Page
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Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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